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thesis.tex
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thesis.tex
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%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%% Online mode %%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%
\providecommand{\chooselayout}{\documentclass[12pt,twoside,longbibliography,nofootinbib,preprintnumbers]{puthesis}}
\providecommand{\modifyoutput}{}
% %%%%%%%%%%%%%%%%%%%%%%%%
% %%%%% Print Mode %%%%%
% %%%%%%%%%%%%%%%%%%%%%%%%
% \providecommand{\chooselayout}{\documentclass[12pt,twoside,longbibliography,nofootinbib,preprintnumbers,singlespace]{puthesis}}
% \providecommand{\modifyoutput}{\newcommand{\printmode}{}}
\chooselayout
\modifyoutput
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Author & title page info
\title{\LARGE{\lettrine[lines=1]{E}{xtragalactic} Searches} \\ \Large{for} \\ \LARGE{Dark Matter Annihilation}}
\submitted{September 2018} % degree conferral date (January, April, June, September, or November)
\copyrightyear{2018} % year in which the copyright is secured by publication of the dissertation.
\author{{Siddharth Mishra-Sharma}}
\adviser{Mariangela Lisanti} %replace with the full name of your adviser
%\departmentprefix{Program in} % defaults to "Department of", but programs need to change this.
\department{Physics}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Tweak float placements
% From: http://mintaka.sdsu.edu/GF/bibliog/latex/floats.html "Controlling LaTeX Floats"
% and based on: http://www.tex.ac.uk/cgi-bin/texfaq2html?label=floats
% LaTeX defaults listed at: http://people.cs.uu.nl/piet/floats/node1.html
% Alter some LaTeX defaults for better treatment of figures:
% See p.105 of "TeX Unbound" for suggested values.
% See pp. 199-200 of Lamport's "LaTeX" book for details.
% General parameters, for ALL pages:
\renewcommand{\topfraction}{0.85} % max fraction of floats at top
\renewcommand{\bottomfraction}{0.6} % max fraction of floats at bottom
% Parameters for TEXT pages (not float pages):
\setcounter{topnumber}{2}
\setcounter{bottomnumber}{2}
\setcounter{totalnumber}{4} % 2 may work better
\setcounter{dbltopnumber}{2} % for 2-column pages
\renewcommand{\dbltopfraction}{0.66} % fit big float above 2-col. text
\renewcommand{\textfraction}{0.15} % allow minimal text w. figs
% Parameters for FLOAT pages (not text pages):
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% N.B.: floatpagefraction MUST be less than topfraction !!
\renewcommand{\dblfloatpagefraction}{0.66} % require fuller float pages
% The documentclass already sets parameters to make a high penalty for widows and orphans.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Use packages
\usepackage{verbatim}
\usepackage{longtable}
% Set parameters for longtable:
% default caption width is 4in for longtable, but wider for normal tables
\setlength{\LTcapwidth}{\textwidth}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Printed vs. online formatting
\ifdefined\printmode
% Printed copy
\usepackage{url}
\else
% Online copy
\usepackage{hyperref}
\usepackage[dvipsnames]{xcolor}
\usepackage{cleveref}
\newcommand\myshade{85}
\colorlet{mylinkcolor}{violet}
\colorlet{mycitecolor}{YellowOrange}
\colorlet{myurlcolor}{Aquamarine}
\hypersetup{colorlinks,bookmarksnumbered,
linkcolor = mylinkcolor!\myshade!black,
citecolor = mycitecolor!\myshade!black,
urlcolor = myurlcolor!\myshade!black,
}
\fi
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Custom imports
%% Lettrine and ornament options
\usepackage{Zallman,lettrine}
\renewcommand\LettrineFontHook{\Zallmanfamily}
\PassOptionsToPackage{svgnames}{xcolor}
\usepackage[object=vectorian]{pgfornament}
\usepackage{lipsum,tikz}
\newcommand{\sectionline}{
\noindent
\begin{center}
{
\resizebox{0.5\linewidth}{1ex}
{{%
{\begin{tikzpicture}
\node (C) at (0,0) {};
\node (D) at (9,0) {};
\path (C) to [ornament=88] (D);
\end{tikzpicture}}}}}%
\end{center}
}
%% Other imports
\usepackage{ae,aecompl}
\usepackage{graphicx}
\usepackage{amsmath}
\usepackage{graphicx}
\usepackage{dcolumn}
\usepackage{bm}
\usepackage{graphics}
\usepackage{afterpage}
\usepackage{float}
\usepackage{subfigure}
\usepackage{rotating}
\usepackage{multirow}
\usepackage{fancyheadings}
\usepackage{theorem}
\usepackage{moreverb}
\usepackage{euscript}
\usepackage{psfrag}
\usepackage{slashed}
\usepackage{mathtools}
%% Listings for code blocks
\usepackage{listings}
\usepackage{color,xcolor}
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\lstdefinestyle{python}{
belowcaptionskip=1\baselineskip,
breaklines=true,
frame=L,
xleftmargin=\parindent,
language=Python,
showstringspaces=false,
basicstyle=\small\ttfamily,
morekeywords={models, lambda, forms,True,False,None},
keywordstyle=\bfseries\color{deepgreen!40!black},
commentstyle=\itshape\color{gray},
identifierstyle=\color{black},
stringstyle=\color{deepred},
rulecolor=\color{gray},
backgroundcolor=\color{mygray},
}
\lstset{escapechar=@,style=python}
\newcommand{\es}[2] {\begin{equation} \label{#1} \begin{split} #2 \end{split} \end{equation}}
%% Import from IGRB paper
\usepackage{amssymb,amsmath,latexsym,graphics, graphicx,epsfig,epstopdf,multirow,comment,hyperref,appendix,slashed,xcolor,afterpage, makecell}
\usepackage{booktabs}
\usepackage{tabularx}
\newcommand{\grp}[1]{\mathrm{#1}}
\newcommand{\norm}[1]{\left\lVert #1 \right\rVert}
\newcommand{\abs}[1]{\left\lvert #1 \right\rvert}
\newcommand{\overbar}[1]{\mkern 2mu\overline{\mkern-2mu#1\mkern-2mu}\mkern 2mu}
\newcommand {\be} {\begin {equation}}
\newcommand {\ee} {\end {equation}}
\newcommand {\nn} {\nonumber}
\newcommand {\bes} {\begin {equation*}}
\newcommand {\ees} {\end {equation*}}
\newcommand {\trit} {^3\text{H}}
\usepackage{csvsimple}
\newcommand{\CP}{\mathbb{CP}}
\newcommand{\Z}{\mathbb{Z}}
\newcommand{\N}{\mathbb{N}}
\newcommand{\R}{\mathbb{R}}
%\newcommand{\C}{\mathbb{C}}
\newcommand{\Gr}{\mathrm{Gr}}
% define "struts", as suggested by Claudio Beccari in
% a piece in TeX and TUG News, Vol. 2, 1993.
\newcommand\Tstrut{\rule{0pt}{2.6ex}} % = `top' strut
\newcommand\Bstrut{\rule[-0.9ex]{0pt}{0pt}} % = `bottom' strut
\def\CA{{\cal A}}
\def\CB{{\cal B}}
\def\CC{{\cal C}}
\def\CD{{\cal D}}
\def\CE{{\cal E}}
\def\CG{{\cal G}}
\def\CH{{\cal H}}
\def\CI{{\cal I}}
\def\CK{{\cal K}}
\def\CL{{\cal L}}
\def\CR{{\cal R}}
\def\CM{{\cal M}}
\def\CN{{\cal N}}
\def\CO{{\cal O}}
\def\CP{{\cal P}}
\def\CQ{{\cal Q}}
\def\CW{{\cal W}}
\newcommand{\upstate}{\left|\uparrow \right\rangle}
\newcommand{\downstate}{\left|\downarrow \right\rangle}
\def\arccosh{\mop{arccosh}}
\newcommand{\beq}{\begin{equation}}
\newcommand{\eeq}{\end{equation}}
\newcommand {\kms} {\,\,\text{km}/\text{s}}
%\newcommand {\fm} {\,\,\text{fm}}
\newcommand{\V}[1]{{ \bf #1}}
\newcommand{\obs}{\text{obs}}
%\newcommand{\sun}{\odot}
%\newcommand{\earth}{\oplus}
\newcommand{\Min}{\text{min}}
\newcommand{\erf}{\text{erf}}
\newcommand{\esc}{\text{esc}}
\newcommand{\kevee}{\text{keV}_{\text{ee}}}
\newcommand{\cpdkg}{\, \, \text{cpd} \,\text{kg}^{-1}}
\newcommand{\flow}{\text{flow}}
\newcommand{\kevnr}{\, \, \text{keV}_\text{nr}}
\newcommand{\CNB}{\text{C}\nu\text{B}}
% Getting error for overflow of counter for footnotes
\usepackage[perpage]{footmisc}
% Using symbols for footnotes
\renewcommand{\thefootnote}{\fnsymbol{footnote}}
%% Import from cluster papers
\usepackage{booktabs}
\newcolumntype{C}[1]{>{\centering\let\newline\\\arraybackslash\hspace{0pt}}m{#1}}
\usepackage{inconsolata}
\usepackage{aas_macros}
%% End custom imports
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Set PDF attributes
\makeatletter
\hypersetup{pdftitle=Extragalactic Searches for Dark Matter Annihilation,
pdfauthor=\@author}
\makeatother
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Front-matter
% For early drafts, you may want to disable some of the frontmatter. Simply change this to "\ifodd 1" to do so.
\ifodd 0
\renewcommand{\maketitlepage}{}
\renewcommand*{\makecopyrightpage}{}
\renewcommand*{\makeabstract}{}
\else
\abstract{\input{abstract.tex}}
% \acknowledgements{\input{acknowledgements}}
\fi
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\
%%%% Main document, appendices and bibliography
\begin{document}
\makefrontmatter
\include{ch-intro/introduction}
\include{ch-nptfit/NPTFit}
\include{ch-igrb/LMNS_arxiv_v2}
\include{ch-darksky/fermi_darksky}
\include{ch-clusters/fermi_data_clusters_arxiv_v2}
\appendix
\include{ch-appendicies/fermi_darksky}
\include{ch-appendicies/fermi_data_clusters_arxiv_v2}
% Make the bibliography single spaced
\singlespacing
\bibliographystyle{utphys}
% add the Bibliography to the Table of Contents
\cleardoublepage
\ifdefined\phantomsection
\phantomsection % makes hyperref recognize this section properly for pdf link
\else
\fi
\addcontentsline{toc}{chapter}{Bibliography}
% include .bib file
\bibliography{ch-nptfit/NPTF,ch-igrb/fermi_igrb,ch-darksky/fermi_darksky,ch-clusters/fermi_clusters,ch-intro/introduction}
\sectionline
\end{document}