working version on Windows

working version on Windows based on suggestion from Tomas on r-package-devel

cleanup

@@ -1,9 +1,10 @@
 #! /bin/sh
 
-rm -fr src/*.o src/*.so autom4te.cache config.log config.status inst/lib/*.a
+rm -fr src/*.o src/*.so autom4te.cache config.log config.status inst/lib/*.a inst/*.a
 rm -fr src/sundials
 rm -fr inst/lib
 rm -f configure~
 rm -f Makevars
 rm -f config.log
 rm -f config.status
+

cleanup.win

@@ -0,0 +1,2 @@
+#! /bin/sh
+./cleanup $*

configure.win

@@ -0,0 +1,2 @@
+#! /bin/sh
+./configure $*

inst/include/arkode/arkode_bandpre.h

@@ -0,0 +1,43 @@
+/* -----------------------------------------------------------------
+ * Programmer(s): Daniel R. Reynolds @ SMU
+ * -----------------------------------------------------------------
+ * SUNDIALS Copyright Start
+ * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * and Southern Methodist University.
+ * All rights reserved.
+ *
+ * See the top-level LICENSE and NOTICE files for details.
+ *
+ * SPDX-License-Identifier: BSD-3-Clause
+ * SUNDIALS Copyright End
+ * -----------------------------------------------------------------
+ * This is the header file for the ARKBANDPRE module, which provides
+ * a banded difference quotient Jacobian-based preconditioner.
+ * -----------------------------------------------------------------*/
+
+#ifndef _ARKBANDPRE_H
+#define _ARKBANDPRE_H
+
+#include <sundials/sundials_nvector.h>
+
+#ifdef __cplusplus /* wrapper to enable C++ usage */
+extern "C" {
+#endif
+
+/* BandPrec inititialization function */
+
+SUNDIALS_EXPORT int ARKBandPrecInit(void* arkode_mem, sunindextype N,
+                                    sunindextype mu, sunindextype ml);
+
+/* Optional output functions */
+
+SUNDIALS_EXPORT int ARKBandPrecGetWorkSpace(void* arkode_mem, long int* lenrwLS,
+                                            long int* leniwLS);
+SUNDIALS_EXPORT int ARKBandPrecGetNumRhsEvals(void* arkode_mem,
+                                              long int* nfevalsBP);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif

inst/include/arkode/arkode_bbdpre.h

@@ -0,0 +1,59 @@
+/* -----------------------------------------------------------------
+ * Programmer(s): Daniel R. Reynolds @ SMU
+ * -----------------------------------------------------------------
+ * SUNDIALS Copyright Start
+ * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * and Southern Methodist University.
+ * All rights reserved.
+ *
+ * See the top-level LICENSE and NOTICE files for details.
+ *
+ * SPDX-License-Identifier: BSD-3-Clause
+ * SUNDIALS Copyright End
+ * -----------------------------------------------------------------
+ * This is the header file for the ARKBBDPRE module, for a
+ * band-block-diagonal preconditioner, i.e. a block-diagonal
+ * matrix with banded blocks.
+ * -----------------------------------------------------------------*/
+
+#ifndef _ARKBBDPRE_H
+#define _ARKBBDPRE_H
+
+#include <sundials/sundials_nvector.h>
+
+#ifdef __cplusplus /* wrapper to enable C++ usage */
+extern "C" {
+#endif
+
+/* User-supplied function Types */
+
+typedef int (*ARKLocalFn)(sunindextype Nlocal, sunrealtype t, N_Vector y,
+                          N_Vector g, void* user_data);
+
+typedef int (*ARKCommFn)(sunindextype Nlocal, sunrealtype t, N_Vector y,
+                         void* user_data);
+
+/* Exported Functions */
+
+SUNDIALS_EXPORT int ARKBBDPrecInit(void* arkode_mem, sunindextype Nlocal,
+                                   sunindextype mudq, sunindextype mldq,
+                                   sunindextype mukeep, sunindextype mlkeep,
+                                   sunrealtype dqrely, ARKLocalFn gloc,
+                                   ARKCommFn cfn);
+
+SUNDIALS_EXPORT int ARKBBDPrecReInit(void* arkode_mem, sunindextype mudq,
+                                     sunindextype mldq, sunrealtype dqrely);
+
+/* Optional output functions */
+
+SUNDIALS_EXPORT int ARKBBDPrecGetWorkSpace(void* arkode_mem, long int* lenrwBBDP,
+                                           long int* leniwBBDP);
+
+SUNDIALS_EXPORT int ARKBBDPrecGetNumGfnEvals(void* arkode_mem,
+                                             long int* ngevalsBBDP);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif

inst/include/arkode/arkode_butcher.h

@@ -0,0 +1,71 @@
+/* -----------------------------------------------------------------
+ * Programmer(s): Daniel R. Reynolds @ SMU
+ * -----------------------------------------------------------------
+ * SUNDIALS Copyright Start
+ * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * and Southern Methodist University.
+ * All rights reserved.
+ *
+ * See the top-level LICENSE and NOTICE files for details.
+ *
+ * SPDX-License-Identifier: BSD-3-Clause
+ * SUNDIALS Copyright End
+ * -----------------------------------------------------------------
+ * This is the header file for ARKode Butcher table structures.
+ * -----------------------------------------------------------------*/
+
+#ifndef _ARKODE_BUTCHER_H
+#define _ARKODE_BUTCHER_H
+
+#include <stdio.h>
+#include <sundials/sundials_types.h>
+
+#ifdef __cplusplus /* wrapper to enable C++ usage */
+extern "C" {
+#endif
+
+/*---------------------------------------------------------------
+  Types : struct ARKodeButcherTableMem, ARKodeButcherTable
+  ---------------------------------------------------------------*/
+struct ARKodeButcherTableMem
+{
+  int q;           /* method order of accuracy       */
+  int p;           /* embedding order of accuracy    */
+  int stages;      /* number of stages               */
+  sunrealtype** A; /* Butcher table coefficients     */
+  sunrealtype* c;  /* canopy node coefficients       */
+  sunrealtype* b;  /* root node coefficients         */
+  sunrealtype* d;  /* embedding coefficients         */
+};
+
+typedef _SUNDIALS_STRUCT_ ARKodeButcherTableMem* ARKodeButcherTable;
+
+/* Utility routines to allocate/free/output Butcher table structures */
+SUNDIALS_EXPORT ARKodeButcherTable
+ARKodeButcherTable_Alloc(int stages, sunbooleantype embedded);
+SUNDIALS_EXPORT ARKodeButcherTable ARKodeButcherTable_Create(int s, int q, int p,
+                                                             sunrealtype* c,
+                                                             sunrealtype* A,
+                                                             sunrealtype* b,
+                                                             sunrealtype* d);
+SUNDIALS_EXPORT ARKodeButcherTable ARKodeButcherTable_Copy(ARKodeButcherTable B);
+SUNDIALS_EXPORT void ARKodeButcherTable_Space(ARKodeButcherTable B,
+                                              sunindextype* liw,
+                                              sunindextype* lrw);
+SUNDIALS_EXPORT void ARKodeButcherTable_Free(ARKodeButcherTable B);
+SUNDIALS_EXPORT void ARKodeButcherTable_Write(ARKodeButcherTable B,
+                                              FILE* outfile);
+SUNDIALS_EXPORT sunbooleantype
+ARKodeButcherTable_IsStifflyAccurate(ARKodeButcherTable B);
+SUNDIALS_EXPORT int ARKodeButcherTable_CheckOrder(ARKodeButcherTable B, int* q,
+                                                  int* p, FILE* outfile);
+SUNDIALS_EXPORT int ARKodeButcherTable_CheckARKOrder(ARKodeButcherTable B1,
+                                                     ARKodeButcherTable B2,
+                                                     int* q, int* p,
+                                                     FILE* outfile);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif

inst/include/arkode/arkode_butcher_dirk.h

@@ -0,0 +1,75 @@
+/* -----------------------------------------------------------------
+ * Programmer(s): Daniel R. Reynolds @ SMU
+ * -----------------------------------------------------------------
+ * SUNDIALS Copyright Start
+ * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * and Southern Methodist University.
+ * All rights reserved.
+ *
+ * See the top-level LICENSE and NOTICE files for details.
+ *
+ * SPDX-License-Identifier: BSD-3-Clause
+ * SUNDIALS Copyright End
+ * -----------------------------------------------------------------
+ * This is the header file for ARKode's built-in DIRK Butcher tables.
+ * -----------------------------------------------------------------*/
+
+#ifndef _ARKODE_DIRK_TABLES_H
+#define _ARKODE_DIRK_TABLES_H
+
+#include <arkode/arkode_butcher.h>
+
+#ifdef __cplusplus /* wrapper to enable C++ usage */
+extern "C" {
+#endif
+
+typedef enum
+{
+  ARKODE_DIRK_NONE    = -1, /* ensure enum is signed int */
+  ARKODE_MIN_DIRK_NUM = 100,
+  ARKODE_SDIRK_2_1_2  = ARKODE_MIN_DIRK_NUM,
+  ARKODE_BILLINGTON_3_3_2,
+  ARKODE_TRBDF2_3_3_2,
+  ARKODE_KVAERNO_4_2_3,
+  ARKODE_ARK324L2SA_DIRK_4_2_3,
+  ARKODE_CASH_5_2_4,
+  ARKODE_CASH_5_3_4,
+  ARKODE_SDIRK_5_3_4,
+  ARKODE_KVAERNO_5_3_4,
+  ARKODE_ARK436L2SA_DIRK_6_3_4,
+  ARKODE_KVAERNO_7_4_5,
+  ARKODE_ARK548L2SA_DIRK_8_4_5,
+  ARKODE_ARK437L2SA_DIRK_7_3_4,
+  ARKODE_ARK548L2SAb_DIRK_8_4_5,
+  ARKODE_ESDIRK324L2SA_4_2_3,
+  ARKODE_ESDIRK325L2SA_5_2_3,
+  ARKODE_ESDIRK32I5L2SA_5_2_3,
+  ARKODE_ESDIRK436L2SA_6_3_4,
+  ARKODE_ESDIRK43I6L2SA_6_3_4,
+  ARKODE_QESDIRK436L2SA_6_3_4,
+  ARKODE_ESDIRK437L2SA_7_3_4,
+  ARKODE_ESDIRK547L2SA_7_4_5,
+  ARKODE_ESDIRK547L2SA2_7_4_5,
+  ARKODE_ARK2_DIRK_3_1_2,
+  ARKODE_BACKWARD_EULER_1_1,
+  ARKODE_IMPLICIT_MIDPOINT_1_2,
+  ARKODE_IMPLICIT_TRAPEZOIDAL_2_2,
+  ARKODE_MAX_DIRK_NUM = ARKODE_IMPLICIT_TRAPEZOIDAL_2_2
+} ARKODE_DIRKTableID;
+
+/* Accessor routine to load built-in DIRK table */
+SUNDIALS_EXPORT ARKodeButcherTable
+ARKodeButcherTable_LoadDIRK(ARKODE_DIRKTableID imethod);
+
+/* Accessor routine to load built-in DIRK table */
+SUNDIALS_EXPORT ARKodeButcherTable
+ARKodeButcherTable_LoadDIRKByName(const char* imethod);
+
+SUNDIALS_EXPORT const char* ARKodeButcherTable_DIRKIDToName(
+  ARKODE_DIRKTableID imethod);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif

inst/include/arkode/arkode_butcher_erk.h

@@ -0,0 +1,71 @@
+/* -----------------------------------------------------------------
+ * Programmer(s): Daniel R. Reynolds @ SMU
+ * -----------------------------------------------------------------
+ * SUNDIALS Copyright Start
+ * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * and Southern Methodist University.
+ * All rights reserved.
+ *
+ * See the top-level LICENSE and NOTICE files for details.
+ *
+ * SPDX-License-Identifier: BSD-3-Clause
+ * SUNDIALS Copyright End
+ * -----------------------------------------------------------------
+ * This is the header file for ARKode's built-in ERK Butcher tables.
+ * -----------------------------------------------------------------*/
+
+#ifndef _ARKODE_ERK_TABLES_H
+#define _ARKODE_ERK_TABLES_H
+
+#include <arkode/arkode_butcher.h>
+
+#ifdef __cplusplus /* wrapper to enable C++ usage */
+extern "C" {
+#endif
+
+typedef enum
+{
+  ARKODE_ERK_NONE         = -1, /* ensure enum is signed int */
+  ARKODE_MIN_ERK_NUM      = 0,
+  ARKODE_HEUN_EULER_2_1_2 = ARKODE_MIN_ERK_NUM,
+  ARKODE_BOGACKI_SHAMPINE_4_2_3,
+  ARKODE_ARK324L2SA_ERK_4_2_3,
+  ARKODE_ZONNEVELD_5_3_4,
+  ARKODE_ARK436L2SA_ERK_6_3_4,
+  ARKODE_SAYFY_ABURUB_6_3_4,
+  ARKODE_CASH_KARP_6_4_5,
+  ARKODE_FEHLBERG_6_4_5,
+  ARKODE_DORMAND_PRINCE_7_4_5,
+  ARKODE_ARK548L2SA_ERK_8_4_5,
+  ARKODE_VERNER_8_5_6,
+  ARKODE_FEHLBERG_13_7_8,
+  ARKODE_KNOTH_WOLKE_3_3,
+  ARKODE_ARK437L2SA_ERK_7_3_4,
+  ARKODE_ARK548L2SAb_ERK_8_4_5,
+  ARKODE_ARK2_ERK_3_1_2,
+  ARKODE_SOFRONIOU_SPALETTA_5_3_4,
+  ARKODE_SHU_OSHER_3_2_3,
+  ARKODE_VERNER_9_5_6,
+  ARKODE_VERNER_10_6_7,
+  ARKODE_VERNER_13_7_8,
+  ARKODE_VERNER_16_8_9,
+  ARKODE_FORWARD_EULER_1_1,
+  ARKODE_RALSTON_EULER_2_1_2,
+  ARKODE_EXPLICIT_MIDPOINT_EULER_2_1_2,
+  ARKODE_MAX_ERK_NUM = ARKODE_EXPLICIT_MIDPOINT_EULER_2_1_2
+} ARKODE_ERKTableID;
+
+/* Accessor routine to load built-in ERK table */
+SUNDIALS_EXPORT ARKodeButcherTable
+ARKodeButcherTable_LoadERK(ARKODE_ERKTableID emethod);
+
+SUNDIALS_EXPORT ARKodeButcherTable
+ARKodeButcherTable_LoadERKByName(const char* emethod);
+
+SUNDIALS_EXPORT const char* ARKodeButcherTable_ERKIDToName(ARKODE_ERKTableID emethod);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif