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pkgdown site fixed
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Fixed pkgdown site of the package
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sn248 committed Nov 10, 2024
1 parent 9c83f92 commit 9414bed
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49 changes: 49 additions & 0 deletions .github/workflows/pkgdown.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
release:
types: [published]
workflow_dispatch:

name: pkgdown.yaml

permissions: read-all

jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4.5.0
with:
clean: false
branch: gh-pages
folder: docs
1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -9,3 +9,4 @@ src/*.dll
*.o
*.a
inst/doc
docs
4 changes: 2 additions & 2 deletions DESCRIPTION
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@@ -1,14 +1,14 @@
Package: sundialr
Type: Package
Title: An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE) Solvers
Version: 0.1.4.2
Version: 0.1.5
Authors@R: c(
person("Satyaprakash", "Nayak", "", "satyaprakash.nayak@gmail.com", c("aut", "cre","cph"), comment = c(ORCID = "0000-0001-7225-1317")),
person("Lawrence Livermore National Security", role = c("cph")),
person("Southern Methodist University", role = c("cph"))
)
Maintainer: Satyaprakash Nayak <satyaprakash.nayak@gmail.com>
URL: https://github.com/sn248/sundialr
URL: https://github.com/sn248/sundialr, http://sn248.github.io/sundialr/
BugReports: https://github.com/sn248/sundialr/issues
Description: Provides a way to call the functions in 'SUNDIALS' C ODE solving library (<https://computing.llnl.gov/projects/sundials>). Currently the serial version of ODE solver, 'CVODE', sensitivity calculator 'CVODES' and differential algebraic solver 'IDA' from the 'SUNDIALS' library are implemented. The package requires ODE to be written as an 'R' or 'Rcpp' function and does not require the 'SUNDIALS' library to be installed on the local machine.
License: BSD_3_clause + file LICENSE
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6 changes: 6 additions & 0 deletions README.md
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Expand Up @@ -21,6 +21,12 @@ to simulate the effect of multiple bolus doses of a drug in clinical pharmacokin
vignette for more details.

## What's new?

### Release 0.1.5
+ Updated the upstream `SUNDIALS` to version 7.1.1.
+ Fixed the `pkgdown` website
+ There was a bug is assigning absolute tolerance in equations. Fixed now.

### Release 0.1.4.1
+ Fixed the linking bug due to multiple defined symbols. No other change.

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6 changes: 5 additions & 1 deletion _pkgdown.yml
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@@ -1 +1,5 @@
destination: docs
url: http://sn248.github.io/sundialr/
template:
bootstrap: 5
bootswatch: cerulean

118 changes: 43 additions & 75 deletions docs/404.html

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