Changelog

1.8.0 (2024-06-07)

Features

update to dna-seq-varlociraptor 5.7.0 (26cfa1b)

1.7.0 (2024-05-24)

Features

update callsets and scenario (#41) (568fe15)

Bug Fixes

update to latest dna-seq-varlociraptor (b32b229)

Performance Improvements

update to dna-seq-varlociraptor 5.6.0 (#45) (98ef04b)

1.6.2 (2024-03-26)

Bug Fixes

update to dna-seq-varlociraptor 5.4.0 (#42) (a2f9923)

1.6.1 (2024-03-13)

Bug Fixes

update to dna-seq-varlociraptor 5.3.1 (#39) (5c5994b)

1.6.0 (2024-03-05)

Features

support dna-seq-varlociraptor 5.3.0 (#37) (366f76c)

1.5.0 (2024-02-09)

Features

add callset consisting of all found variants (a436c97)
update config (#36) (6621515)

Bug Fixes

set lowercase column names (#31) (de1f5c3)

1.4.1 (2023-05-08)

Bug Fixes

for callsets with known variants, also include ffpe artifacts (#28) (7953952)

Performance Improvements

update to dna-seq-varlociraptor 3.24.0 (b305d51)
update to dna-seq-varlociraptor 3.24.2 (#29) (e44834d)

1.4.0 (2023-04-24)

Features

split events by af (#23) (a0ebdd7)
split pathogenic callsets into more certain and only potential ones (#22) (4ad6bb6)

Bug Fixes

Update vembrane (#26) (d3c942c)

1.3.4 (2023-02-15)

Bug Fixes

also display germline events (87a413f)

Performance Improvements

update to dna-seq-varlociraptor 3.20.1

1.3.3 (2023-01-16)

Bug Fixes

check whether sex is correctly specified in sample sheet (#18) (5e03815)
properly update config in case it is given via a module definition (#14) (d35b8b3)

1.3.2 (2023-01-15)

Bug Fixes

update to dna-seq-varlociraptor 3.19.3 (#16) (fb7c344)

1.3.1 (2022-11-14)

Performance Improvements

update to dna-seq-varlociraptor 3.18.2 (#12) (687aaa2)

1.3.0 (2022-10-04)

Features

update to dna-seq-varlociraptor 3.18.1 (#10) (955b835)

Bug Fixes

add reference to MIRACUM-Pipe in report description. (06b72e2)
allow somatic-normal mutations above VAF 0.5 (#8) (8dacb93)
use latest dna-seq-varlociraptor release (d0a80f1)

1.2.0 (2022-06-03)

Features

Regroup calls into somatic and LOH variants, further stratified into the same categories (VUS, splic, pathogenic, cancer genes, pathways, ...) (#6) (a4b2307)

1.1.0 (2022-05-20)

Features

update to dna-seq-varlociraptor 3.14.0 (76b133a)

1.0.1 (2022-05-12)

Bug Fixes

update to latest dna-seq-varlociraptor (a42093f)

1.0.0 (2022-05-12)

Features

update to latest dna-seq-varlociraptor (32e2f95)

Bug Fixes

allow inheritance of somatic mutations from normal (adacea9)