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source of test data #21

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nagoue opened this issue Jul 10, 2023 · 2 comments
Open

source of test data #21

nagoue opened this issue Jul 10, 2023 · 2 comments

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@nagoue
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nagoue commented Jul 10, 2023

Hi,

I am wondering where to find the raw datasets from where the test samples are based on ?
Is the information (metadata) is available somewhere ?
It is a general question, not specific to any snakemake workflow.

Thanks !

@SilasK
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SilasK commented Jul 13, 2023

I don't there is an official source of test data for workflows. I guess each workflow has it's own input data e.g. RNAseq has not the same as variant calling.

@nagoue
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nagoue commented Jul 13, 2023

Hi, as you I guess all test data are specific to each workflow. I am wondering where can I find the id of the raw data from where the test are generated ?
I would be interested once I tested the workflow with the test data, to try it with the complete set of raw data if publicly available.

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