fix: ensure irods env settings get priority #25

	name: CI

	on:
	push:
	branches:
	- main
	pull_request:

	jobs:
	formatting:
	runs-on: ubuntu-latest
	steps:
	- name: Check out the code
	uses: actions/checkout@v3

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install poetry
	run: pip install poetry

	- name: Determine dependencies
	run: poetry lock

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"
	cache: poetry

	- name: Install Dependencies using Poetry
	run: poetry install

	- name: Check formatting
	run: poetry run black --check .

	linting:
	runs-on: ubuntu-latest
	steps:
	- name: Check out the code
	uses: actions/checkout@v3

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install poetry
	run: pip install poetry

	- name: Determine dependencies
	run: poetry lock

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"
	cache: poetry

	- name: Install Dependencies using Poetry
	run: poetry install

	- name: Check code
	run: poetry run flake8

	testing:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install poetry
	run: pip install poetry

	- name: Determine dependencies
	run: poetry lock

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"
	cache: poetry

	- name: Install dependencies
	run: poetry install

	- name: Setup iRODS
	run: \|
	docker run -d -p 1247:1247 --name provider mjstealey/irods-provider-postgres:4.2.2 -i run_irods
	sleep 10

	- name: Run pytest
	run: poetry run coverage run -m pytest tests/tests.py

	- name: Run Coverage
	run: poetry run coverage report -m

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