From 7e2840992948ee89dcc336522dc98a74fe0adf00 Mon Sep 17 00:00:00 2001 From: Milot Mirdita Date: Thu, 13 Oct 2022 17:59:33 +0900 Subject: [PATCH] Update docker install instruction to GHCR --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index f52d35c5b..bb63707ac 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ MMseqs2 (Many-against-Many sequence searching) is a software suite to search and [Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics, doi: 10.1093/bioinformatics/btab184 (2021)](https://doi.org/10.1093/bioinformatics/btab184). -[![BioConda Install](https://img.shields.io/conda/dn/bioconda/mmseqs2.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/mmseqs2) [![Github All Releases](https://img.shields.io/github/downloads/soedinglab/mmseqs2/total.svg)](https://github.com/soedinglab/mmseqs2/releases/latest) [![Biocontainer Pulls](https://img.shields.io/endpoint?url=https%3A%2F%2Fmmseqs.com%2Fbiocontainer.php%3Fcontainer%3Dmmseqs2)](https://biocontainers.pro/#/tools/mmseqs2) [![Docker Pulls](https://img.shields.io/docker/pulls/soedinglab/mmseqs2.svg)](https://hub.docker.com/r/soedinglab/mmseqs2) [![Build Status](https://dev.azure.com/themartinsteinegger/mmseqs2/_apis/build/status/soedinglab.MMseqs2?branchName=master)](https://dev.azure.com/themartinsteinegger/mmseqs2/_build/latest?definitionId=2&branchName=master) +[![BioConda Install](https://img.shields.io/conda/dn/bioconda/mmseqs2.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/mmseqs2) [![Github All Releases](https://img.shields.io/github/downloads/soedinglab/mmseqs2/total.svg)](https://github.com/soedinglab/mmseqs2/releases/latest) [![Biocontainer Pulls](https://img.shields.io/endpoint?url=https%3A%2F%2Fmmseqs.com%2Fbiocontainer.php%3Fcontainer%3Dmmseqs2)](https://biocontainers.pro/#/tools/mmseqs2) [![Build Status](https://dev.azure.com/themartinsteinegger/mmseqs2/_apis/build/status/soedinglab.MMseqs2?branchName=master)](https://dev.azure.com/themartinsteinegger/mmseqs2/_build/latest?definitionId=2&branchName=master)

@@ -28,7 +28,7 @@ MMseqs2 can be used by [compiling from source](https://github.com/soedinglab/MMs # install via conda conda install -c conda-forge -c bioconda mmseqs2 # install docker - docker pull soedinglab/mmseqs2 + docker pull ghcr.io/soedinglab/mmseqs2 # static build with AVX2 (fastest) wget https://mmseqs.com/latest/mmseqs-linux-avx2.tar.gz; tar xvfz mmseqs-linux-avx2.tar.gz; export PATH=$(pwd)/mmseqs/bin/:$PATH # static build with SSE4.1 @@ -40,7 +40,7 @@ MMseqs2 requires an AMD or Intel 64-bit system (check with `uname -a | grep x86_ MMseqs2 also works on ARM64 systems and on PPC64LE systems with POWER8 ISA or newer. -We also provide static binaries for all supported platforms at [mmseqs.com/latest](https://mmseqs.com/latest). +We provide static binaries for all supported platforms at [mmseqs.com/latest](https://mmseqs.com/latest). MMseqs2 comes with a bash command and parameter auto completion, which can be activated by adding the following lines to your $HOME/.bash_profile: