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Use files.wwpdb.org for pdb_seqres (#773)
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ftp.wwpdb.org is being deprecated. It does not accept http(s) requests anymore. Moving to the new FTP archive over HTTP service.
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alirezaomidi authored Nov 7, 2023
1 parent 6f45232 commit b22d5f6
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion data/workflow/databases.sh
Original file line number Diff line number Diff line change
Expand Up @@ -147,7 +147,7 @@ case "${SELECTION}" in
"PDB")
if notExists "${TMP_PATH}/pdb_seqres.txt.gz"; then
date "+%s" > "${TMP_PATH}/version"
downloadFile "https://ftp.wwpdb.org/pub/pdb/derived_data/pdb_seqres.txt.gz" "${TMP_PATH}/pdb_seqres.txt.gz"
downloadFile "https://files.wwpdb.org/pub/pdb/derived_data/pdb_seqres.txt.gz" "${TMP_PATH}/pdb_seqres.txt.gz"
fi
push_back "${TMP_PATH}/pdb_seqres.txt.gz"
INPUT_TYPE="FASTA_LIST"
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