Merge branch 'master' into master

solvi808 · Apr 16, 2024 · 61c4bd9 · 61c4bd9
2 parents 6fc6a90 + c3d2b80
commit 61c4bd9
Show file tree

Hide file tree

Showing 228 changed files with 9,650 additions and 2,557 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -9,7 +9,6 @@
 ^gt\.Rproj$
 ^_pkgdown\.yml$
 ^codecov\.yml$
-^README\.Rmd$
 ^README\.md$
 ^LICENSE\.md$
 ^CITATION\.cff$

diff --git a/.github/SECURITY.md b/.github/SECURITY.md
@@ -2,12 +2,12 @@
 
 ## Supported Versions
 
-Use this section to tell people about which versions of your project are
+The following provides information on the versions of gt that are
 currently being supported with security updates.
 
 | Version    | Supported          |
 | ---------- | ------------------ |
-| >= 0.9.0   | :white_check_mark: |
+| >= 0.10.1  | :white_check_mark: |
 
 ## Reporting a Vulnerability
 

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -25,8 +25,6 @@ jobs:
           - {os: windows-latest, r: '4.2'}
           # # use 4.1 to check with rtools40's older compiler
           - {os: windows-latest, r: '4.1'}
-          # # Use 3.6 to trigger usage of RTools35
-          - {os: windows-latest, r: '3.6'}
 
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
@@ -41,7 +39,8 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v3
+      - name: Check out repository
+        uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 

diff --git a/.github/workflows/build-site.yaml b/.github/workflows/build-site.yaml
@@ -2,15 +2,14 @@ on:
   schedule:
     - cron: '0 23 * * *'
 
-name: build-quarto-gt-examples-site
+name: netlify-quarto-gt-examples-site
 
 jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-
-      - uses: r-lib/actions/setup-pandoc@v2
+      - name: Check out repository
+        uses: actions/checkout@v4
 
       - name: Set up Quarto
         uses: quarto-dev/quarto-actions/setup@v2
@@ -59,7 +58,6 @@ jobs:
           production-branch: master
           github-token: ${{ secrets.GITHUB_TOKEN }}
           deploy-message: "Deploy from GitHub Actions"
-          # these all default to 'true'
           enable-pull-request-comment: false
           enable-commit-comment: true
           enable-commit-status: true

diff --git a/.github/workflows/connect-deploy.yaml b/.github/workflows/connect-deploy.yaml
@@ -0,0 +1,62 @@
+on:
+  schedule:
+    - cron: '15 23 * * *'
+
+name: connect-quarto-gt-examples-site
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+        with:
+          version: pre-release
+
+      - name: Print Quarto version
+        run: |
+          quarto --version
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.2'
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          packages: |
+            gt
+            shiny
+            tidyverse
+            dplyr
+            tidyr
+            ggplot2
+            lubridate
+            paletteer
+            janitor
+            rsconnect
+            any::sessioninfo
+          dependencies: '"hard"'
+
+      - name: Install package
+        run: R CMD INSTALL .
+
+      - name: Generate Quarto files for the website
+        run: |
+          Rscript -e 'gt:::write_gt_examples_qmd_files()'
+
+      - name: Build Quarto site
+        run: |
+          quarto render gt_qmd_examples
+
+      - name: Publish to Connect
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: connect
+          path: gt_qmd_examples
+          render: false
+          CONNECT_SERVER: ${{ secrets.CONNECT_SERVER }}
+          CONNECT_API_KEY: ${{ secrets.CONNECT_API_KEY }}
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -14,7 +14,8 @@ jobs:
       GITHUB_PAT: ${{ secrets.GHA_PAT }}
 
     steps:
-      - uses: actions/checkout@v3
+      - name: Check out repository
+        uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -13,7 +13,8 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - name: Check out repository
+        uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.gitignore b/.gitignore
@@ -45,3 +45,4 @@ docs
 *.html
 *.qmd
 /*.docx
+tests/testthat/Rplots.pdf
diff --git a/CITATION.cff b/CITATION.cff
@@ -3,7 +3,7 @@ message: 'If you wish to cite the "gt" package use:'
 type: software
 license: MIT
 title: 'gt: Easily Create Presentation-Ready Display Tables'
-version: 0.10.0
+version: 0.10.1
 abstract: Build display tables from tabular data with an easy-to-use set of functions.
   With its progressive approach, we can construct display tables with a cohesive set
   of table parts. Table values can be formatted using any of the included formatting

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Type: Package
 Package: gt
-Version: 0.10.0.9000
+Version: 0.10.1.9000
 Title: Easily Create Presentation-Ready Display Tables
 Description: Build display tables from tabular data with an easy-to-use set of
     functions. With its progressive approach, we can construct display tables
@@ -21,6 +21,8 @@ Authors@R: c(
            comment = c(ORCID = "0000-0002-4191-6301")),    
     person("JooYoung", "Seo", , "jseo1005@illinois.edu", "aut",
            comment = c(ORCID = "0000-0002-4064-6012")),
+    person("Ken", "Brevoort", , "ken@brevoort.com", "aut",
+           comment = c(ORCID = "0000-0002-4001-8358")),
     person("Posit Software, PBC", role = c("cph", "fnd"))
     )
 License: MIT + file LICENSE
@@ -58,6 +60,9 @@ Suggests:
     digest (>= 0.6.31),
     fontawesome (>= 0.5.2),
     ggplot2,
+    grid,
+    gtable,
+    katex (>= 1.4.1),
     knitr,
     lubridate,
     magick,
@@ -68,7 +73,8 @@ Suggests:
     shiny (>= 1.7.4),
     testthat (>= 3.1.9),
     tidyr,
-    webshot2 (>= 0.1.0)
+    webshot2 (>= 0.1.0),
+    withr
 Roxygen: list(markdown = TRUE)
 Collate: 
     'as_data_frame.R'
@@ -116,6 +122,7 @@ Collate:
     'opts.R'
     'print.R'
     'reexports.R'
+    'render_as_gtable.R'
     'render_as_html.R'
     'render_as_i_html.R'
     'resolver.R'
@@ -136,6 +143,7 @@ Collate:
     'utils_pipe.R'
     'utils_plots.R'
     'utils_render_common.R'
+    'utils_render_grid.R'
     'utils_render_html.R'
     'utils_render_latex.R'
     'utils_render_rtf.R'

diff --git a/LICENSE b/LICENSE
@@ -1,2 +1,2 @@
-YEAR: 2018-2023
-COPYRIGHT HOLDER: gt authors
+YEAR: 2018-2024
+COPYRIGHT HOLDER: Posit Software, PBC
diff --git a/LICENSE.md b/LICENSE.md
@@ -1,24 +1,21 @@
-The MIT License (MIT)
+# MIT License
 
-Copyright (c) 2018-2023 gt authors
+Copyright (c) 2018-2024 Posit Software, PBC
 
-Permission is hereby granted, free of charge, to any person
-obtaining a copy of this software and associated documentation
-files (the “Software”), to deal in the Software without
-restriction, including without limitation the rights to use,
-copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the
-Software is furnished to do so, subject to the following
-conditions:
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
 
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
 
-THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
-OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
-HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
-WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
-FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
-OTHER DEALINGS IN THE SOFTWARE.
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,6 +1,7 @@
 # Generated by roxygen2: do not edit by hand
 
 S3method(as.data.frame,gt_tbl)
+S3method(plot,gt_gtable)
 S3method(print,gt_group)
 S3method(print,gt_tbl)
 S3method(print,rtf_text)

diff --git a/NEWS.md b/NEWS.md
@@ -1,8 +1,46 @@
 # gt (development version)
 
-* The performance of rendering bigger tables as HTML has been improved and is now up to 3 times faster than before (@mgirlich, #1470).
+* PDF output now allows the font size of a table to be set using the table.font.size parameter in the tab_options function (#1472).  The font sizes of individual table cells (including those in the body, stubs, column headings, etc.) can be set using tab_style function. Several other options specified in tab_style are now reflected in PDF output.
 
-* `gtsave()` now returns the file path invisibly instead of `TRUE` (@olivroy, #1478).
+* `data_color()` throws a more informative error if a calculation failed (@olivroy, #1373).
+
+* `gtsave()` saves correctly to .rtf if using `cols_label()` and `summary_rows()` or `grand_summary_rows()` (@olivroy, #1233)
+
+# gt 0.10.1
+
+## Improvements to nanoplots
+
+* Box plots can now be generated via `cols_nanoplot()` by using `plot_type = "boxplot"`. These plots are laid out horizontally and will, by default, share the same plot axis across rows. (#1527)
+
+* We can now have single line bar plots generated through `cols_nanoplot()`. If the plot_type is set to `"bar"` and single values are found, then horizontal bars will be generated and will be comparable across rows. (#1514, #1515, #1519)
+
+* The `autohide` argument was added to the `cols_nanoplot()` function so that columns containing input data for nanoplots could be conveniently hidden from final presentation. (#1533)
+
+* Added option (the `data_area_fill_color` arg in `nanoplot_options()`) to change fill color of nanoplot data area for line-type plots (#1521). (#1534)
+
+## Minor improvements and bug fixes
+
+* The performance of rendering bigger tables as HTML has been improved and is now up to three times faster than before. (#1470, thanks @mgirlich)
+
+* Introduced a small performance improvement by no longer calling `utils::packageVersion()` internally (#1524). (#1525, thank you @slodge)
+
+* Code and test refactoring was performed to generally improve performance and code readability. (#1480, thanks @olivroy) 
+* The `gtsave()` function now returns the file path invisibly instead of `TRUE`. (#1478, thank you @olivroy)
+
+* Most functions now produce better error messages if not provided with a `gt_tbl` object. (#1504, c/o @olivroy)
+
+* The URL formatting through `fmt_url()` has been improved by preventing link text breaking across lines (#1509). (#1537) 
+* We now remove some unnecessary newlines in the HTML text produced by `as_raw_html()`, which caused an issue when integrating **gt** tables into **blastula** email messages (#1506). (#1520)
+
+* The `tab_spanner_delim()` now lets you use `delim` strings longer than a single character (#1469). (#1513)
+
+* Fix for footnotes in LaTeX tables where no footnote marks are to be added; this previously showed `"NA"` as the mark in the footer area but this is no longer displayed (#1416). (#1512, thanks @kbrevoort)
+
+* LaTeX tables can now have their overall width specified (#119, #329). (#1495, thank you @kbrevoort)
+
+* Fix issue where a `cols_width()` specification involving percentage values fails for LaTeX tables (#1465). (#1495, thanks again @kbrevoort!)
+
+* Several documentation fixes were made to address inconsistencies and improve clarity. (#1491)
 
 # gt 0.10.0
 

diff --git a/R/as_data_frame.R b/R/as_data_frame.R
@@ -14,7 +14,7 @@
 #
 #  This file is part of the 'rstudio/gt' project.
 #
-#  Copyright (c) 2018-2023 gt authors
+#  Copyright (c) 2018-2024 gt authors
 #
 #  For full copyright and license information, please look at
 #  https://gt.rstudio.com/LICENSE.html

diff --git a/R/build_data.R b/R/build_data.R
@@ -14,7 +14,7 @@
 #
 #  This file is part of the 'rstudio/gt' project.
 #
-#  Copyright (c) 2018-2023 gt authors
+#  Copyright (c) 2018-2024 gt authors
 #
 #  For full copyright and license information, please look at
 #  https://gt.rstudio.com/LICENSE.html

diff --git a/R/compile_scss.R b/R/compile_scss.R
@@ -14,7 +14,7 @@
 #
 #  This file is part of the 'rstudio/gt' project.
 #
-#  Copyright (c) 2018-2023 gt authors
+#  Copyright (c) 2018-2024 gt authors
 #
 #  For full copyright and license information, please look at
 #  https://gt.rstudio.com/LICENSE.html