Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add urlsketch command #34

Merged
merged 15 commits into from
May 21, 2024
Merged

add urlsketch command #34

merged 15 commits into from
May 21, 2024

Conversation

bluegenes
Copy link
Collaborator

@bluegenes bluegenes commented May 19, 2024 •
edited
Loading

urlsketch for downloading from any url, rather than just the genbank assembly datasets (gbsketch)

Notes:

  • changes failure output format slightly! the new header is: accession,name,moltype,md5sum,download_filename,url, which matches the urlsketch input format.

  • fixes add urlsketch #20

@bluegenes bluegenes mentioned this pull request May 20, 2024
Merged
bluegenes added a commit that referenced this pull request May 20, 2024
@bluegenes
Merge pull request #36 from sourmash-bio/fix-fail
5db17ff 
- fixes #35. To finish, enable reading failure file as `urlsketch` input in #34.

Changes:
- `url.as_str()` prior to printing
- test output format of failed file
@bluegenes bluegenes changed the title WIP: add urlsketch command add urlsketch command May 21, 2024
@bluegenes bluegenes changed the title add urlsketch command add urlsketch command May 21, 2024
@bluegenes bluegenes merged commit c93112e into main May 21, 2024
1 check passed
@bluegenes bluegenes deleted the urlsketch branch July 15, 2024 18:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

add urlsketch
1 participant
@bluegenes