DeepInteract

CircRNA-disease inference using deep ensemble model based on triple association

• DeepInteract_new.py is the main code using both supervised and unsupervised version of deep ensemble models
• Supervised version utilized autoencoder and deep neuron network to classify one circRNA to disease-related one or non-disease-related one.
• Unsupervised version of DeepInteract untilized two parts of autoencoders to cluster the samples into two groups representing disease-related circRNAs or non-disease-related circRNAs.

Usage:

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-THEANO_FLAGS=mode=FAST_RUN,device=gpu0,floatX=float32 python DeepInteract_new.py using THEANO_FLAGS=mode=FAST_RUN,device=gpu0,floatX=float32 is for using gpu.