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Rename CSF segmentations in derivatives #154

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merged 5 commits into from
Feb 21, 2024
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sandrinebedard
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@sandrinebedard sandrinebedard commented Jan 26, 2024

Description

This PR does the following steps on CSF segmentations:

  • renames the CSF segmentations in the derivatives from csfseg-manual to label-CSF_seg

  • Reorients and resmaples to native space using this script:

I ran the following command with the script:

sct_run_batch -jobs 1 -path-data ~/datasets/data-multi-subject -path-out ~/process_results/reorient_csf_v2 -script fix-orientation-derivatives.sh -include-list [ sub-cmrrb03 sub-tokyoIngenia06 sub-nottwil03 sub-pavia04 sub-barcelona05 sub-geneva04 sub-perform02 sub-nottwil04 sub-nottwil01 sub-tokyoIngenia05 ]~~

@sandrinebedard
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@mguaypaq finally, we want to revert this commit, I am not sure how in git annex: f7f3db5

and delete: 79e7157

@mguaypaq mguaypaq merged commit 5398c0f into master Feb 21, 2024
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@mguaypaq mguaypaq deleted the sb/fix-csf-seg-names branch February 21, 2024 22:14
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