diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..16fd0a9fca --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30820--459e971184aca2428a0033da391340996307e23a423c6a69dda4c6c95328daaf.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.json new file mode 100644 index 0000000000..4e77e15649 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Theo Mathieu", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..0562248ff8 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s231587--703bb31bbda6fac63f90a68ca79fef013df708ef2ef13e2ac7545dbee4f08c6b.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.json new file mode 100644 index 0000000000..f0c2746ec3 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Raphaëlle Schlienger", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..488146263e --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52750--01e484b62bc7bc5f3a9927b5eaf9cb57f7855beb814f0f5c740cec50440ac386.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.json new file mode 100644 index 0000000000..b596719c6a --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valošek", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..fa36a0fe68 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s231033--b8ac5ca846227008a5ed2f576bc37526552da982201a435c261009abb1b5748a.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.json new file mode 100644 index 0000000000..08bc1ca1f8 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Olivia Kowalczyk", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..89478d5547 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s232263--5342e0d69dd0894c9a66334e3b83519a978beee422906b89e31211135727ccbc.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.json new file mode 100644 index 0000000000..f5ad45d182 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "STAPLE", + "Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..e1deab9afa --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7576--04f1f68df8013befa96d9734828889119bfadf472c0aeb9be369789dcb336ef5.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..c02c1ddfd3 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30419--749abd3e708f724d8becee4ebcc384380b094b763dd5a55a17a42a3dc9fef033.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..96ecf67c24 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31140--753ef2fa5759ee1ba154952cc604009ba6bbff447946bc491437f41fd1d1f795.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..6a835ac6b8 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31130--9849b357560385cd3d3903c4c682646bf8c07cc3cc01540d15318d432e017181.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..bc93802cde --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30599--2c73e0212dfb7edd96d4b228c3db38818cd666e72ad40801c7402a6aca627a33.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..ad46c88d6d --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31457--f6c707cc51182039425389fe55762d5171278c83ac1dfeb0908d22b1af8b9c64.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..4ffdac7591 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30706--6c0364c210d63a076c2af19fa4a3faa4a84832006ce7baaefc7c67b60eea4684.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.json new file mode 100644 index 0000000000..4e77e15649 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Theo Mathieu", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..50b4209252 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s233873--17162e121e0b9b2c0d6bff7032dbb114b3998095c29e0f441c265de4a510a86e.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.json new file mode 100644 index 0000000000..f0c2746ec3 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Raphaëlle Schlienger", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..e567e288e7 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53626--2903800749fb705f13e673bd49f30e281641ec8b3e9085a1801334228c1a29b7.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.json new file mode 100644 index 0000000000..b596719c6a --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valošek", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..bcc9e7b1a7 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s233878--4d22dace4aa4822890fa4fa80e0bc23b8b56a7bf1f58d8adcacf19ee7fe32e21.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.json new file mode 100644 index 0000000000..08bc1ca1f8 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Olivia Kowalczyk", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..f78378fc2a --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s234990--e0fca05481d550bbb11b2f31aa786ba1f5f67850394214e3b44d1d000809af62.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.json new file mode 100644 index 0000000000..f5ad45d182 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "STAPLE", + "Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..d4953f4253 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8578--d81921c9fda67565f58d9218b0f93205f5b43e710e1605e3a6fb76c40284a726.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..c4f56d98ba --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30916--ab5650ca16ed5a7ec2e41e6643094fda9667883084418843748043b14ea04a23.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..d61980d6b4 --- /dev/null +++ b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31515--8a488a5acfea01f9aa836905cfe8764044aa36e552a17cf0d7a4b43bd9b4af57.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..160022d351 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31317--e0e6378e4803ae1738037e26b7a58e229fa533c28727f5567b261f00eb67f15c.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..e4b98734a0 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s70265--400a207a5ccb1ec06d4e0f0528062019f231c5eec1cecded9511a0fc92e18e5a.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.json new file mode 100644 index 0000000000..4e77e15649 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Theo Mathieu", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..2178e8fe28 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s523830--8ec69bfc149a2fc8a73175dae14c2108fbd5ffc234f4b5666993597df9fcd7d2.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.json new file mode 100644 index 0000000000..f0c2746ec3 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Raphaëlle Schlienger", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..3a4a645fec --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s119917--ead6ae9b4a9856b2e5b3524b6cee5bf232f3bbf6070524616c14626a939af2ec.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.json new file mode 100644 index 0000000000..b596719c6a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valošek", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..0608b762df --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s521712--c35eff6e159e6f76c2a5417ee685920170b5260b40c3a92a6f2e1aa70ac28fa6.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater4_label-rootlets_dseg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater4_label-rootlets_dseg.json new file mode 100644 index 0000000000..08bc1ca1f8 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater4_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Olivia Kowalczyk", + "Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater4_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater4_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..77e881bc44 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater4_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s525735--10d4415fbbce449d62fd8e2311fead8de5bbda10060c6a7d3072fc948de43c47.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-staple_label-rootlets_dseg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-staple_label-rootlets_dseg.json new file mode 100644 index 0000000000..f5ad45d182 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-staple_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "STAPLE", + "Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-staple_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-staple_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..4ac88130d1 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-staple_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s17952--76588e01d13621daeaa17147fe53d9d5767431c53165b000d1c7bd00fa8b0fb0.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..ced0e8766c --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30869--7dd54f16f16da7899e747c43afb63a364d55f994e47174f7e4cb5e9a0a49a0a8.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..83c89eabac --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31032--bc1de8c1aec02c6d68af11434631055a10b125d8c4b4339cd370c5bbe20448ee.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..36b6373ec2 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31699--e5a949159ab5bb62a9dcfc4bf2a09ec3d81ca5bf2626f52af1351d468da976e7.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..9cce4f4b02 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30589--5f9d8c11f56784e6ab8b18d785693b3391fa1fd383bbfdf0b2dec8c0e02b2c23.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..fa4e4b03f7 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31462--96f5b46d6e128bd4009d24bd8040621a6293c0ea1d0f156ed0687016d09271cf.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..a19af3ed77 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31520--b83da9596319659e3d16ee9825e99a89026f30417469969a5d1abb36484a759c.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..6f39331340 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s30604--64d936afcd0502db5a956bdd72d15c165edf886c3b001ec83d0ba12a38925cc0.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..6fb1241db8 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s27378--bd4e7caa6c448e87a34f08a0826e5834c95200f19607f6fd0c64953dc608d34e.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..8e1534eb1e --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28037--17ded355895987d8a1e96deb1aa6a359f423b0362fa0da8ef531b5ff0e39a170.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-rootlets_dseg.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-rootlets_dseg.json new file mode 100644 index 0000000000..5c86ce64e9 --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-rootlets_dseg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": "orig", + "GeneratedBy": [ + { + "Name": "Manual", + "Author": "Jan Valosek, Theo Mathieu", + "Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457", + "Date": "2023-12-01" + } + ] +} diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-rootlets_dseg.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-rootlets_dseg.nii.gz new file mode 100644 index 0000000000..1bf66d105e --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-rootlets_dseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s31709--2f12768ed73f60f4b263fd97075d2dabfd7b11b6f9265f53399aec05c24a4e9c.nii.gz