Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add spine discrete segmentation and canal segmentation from totalspineseg project #169

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Add spine discrete segmentation and canal segmentation from totalspineseg project #169

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
The table of contents is too big for display.
Diff view
Diff view
  •  
  •  
  •  
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T1w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 13:34:52"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T1w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s80172--25051a4432448d33d5b640a8f916bc6824d738e808e5bfffc60162fd1635d27f.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T1w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 13:34:52"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T1w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s116811--ddc177bc00a79bda3586effd443cd8d5118ce4986f788065b882e78a1afca4d0.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 13:35:48"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s43660--703163bdea9c8649c734d4e18a9fd8f258f2e1160f38000c7b06b2ffabe44ac0.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 13:35:48"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s94464--199794f08f712fb2bc4c0c54b561551c6b8a07c7c25f90670f32f607392684bb.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T1w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:34:32"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T1w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s79657--ae7597a570244bc4ab12789535a51accf822c753d3b9e77bbfa0c598898797a6.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T1w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:34:32"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T1w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s117990--c2af0d95691119db9c6a7e6fb0edb219ad48f3b2f9d03d213ae4a92287e53106.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:35:41"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s43560--3c87673bc518e4b245bf58ede60912ccf3fea92ba2172d3f2b16e54ba1835391.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:35:41"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s98958--47c136a96ccd9d928be359e6c23b4a308eb019a9fda4841d10960df496af869d.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:50:12"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s79801--60cfb7cd2de9f1b1e97f863eb1f9f9d70cbd9dea6e8a256bbd87b1564f6371d9.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:50:12"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s118251--7870ffcad56dc64f316ea5a0e2c15aa785d9b27db45be0479af8f23e6e1fe162.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:51:14"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s42071--9caffd00312a989596d719cf96ac749513d38bc9c491a71413af1de4779a0ea5.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:51:14"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s93219--f9e12cc88a7d2a7a617d088c2f57ffae90a456137867e74e898578c8f592f2cb.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:48:42"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s79623--9e636c6fba97e8d24517d93caae555500728de07f1dbf5548918065220652632.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:48:42"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s117822--67e498d05cd87e6dafbcb55a2ab459011b0fb20123433d8bb4fb47db1ce2b36d.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-canal_seg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:49:46"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-canal_seg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s42822--2c1d70c7c9fc2d2b68d0390b89cffa086233d5975b1d9cdc7b42eafcf3066cb6.nii.gz
21 changes: 21 additions & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-spine_dseg.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "sct_apply_transfo",
"Version": "SCT v6~",
"Date": "2024-03-19 14:10:05",
"Description": "Subject registration to the PAM50 template then reverse transformation applied to the template to bring the segmentations/atlas to the subject space. see https://github.com/neuropoly/totalspineseg/blob/main/run/reg2pam50.sh"
},
{
"Name": "Manual",
"Author": "Yehuda Warszawer",
"Date": "2024-03-19 14:10:05"
},
{
"Name": "Manual",
"Author": "Nathan Molinier",
"Date": "2024-06-26 16:49:46"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-spine_dseg.nii.gz
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/annex/objects/SHA256E-s97132--b3bf17b27dbe419828769d40f87a59328c18fdf14262b42370db76db37dc83b9.nii.gz
Loading
Loading