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4. SPM Toolbox

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Tamas Spisak edited this page Oct 16, 2018 · 23 revisions

The SPM Toolbox is still under development, please consider using the R-package instead, or contact Tamas Spisak (tamas.spisak@uk-essen.de) to get notified about Toolbox release.

Usage of the SPM Toolbox

1. Start pTFCE SPM Toolbox from the SPM "Toolboxes" roll-down menu.

How to launch pTFCE SPM Toolbox

2. Select the SPM.mat of your previously estimated analysis.

3. Select the contrast you want to enhance with pTFCE.

The pTFCE SPM Toolbox will create a new contrast item having the same contrast weight as the original but enhances the statistical parametric map.

3. The probabilistic threshold-free cluster enhancement is performed in about 30-60 seconds.

pTFCE SPM Toolbox progress bar

4. Visualise the enhanced contrast (ending with pTFCE) with the "Results" button in SPM, as usual.

Please cite:

Tamás Spisák, Zsófia Spisák, Matthias Zunhammer, Ulrike Bingel, Stephen Smith, Thomas Nichols, Tamás Kincses, Probabilistic TFCE: a generalised combination of cluster size and voxel intensity to increase statistical power. Neuroimage, 185:12-26. DOI: 10.1016/j.neuroimage.2018.09.078

Contact: tamas.spisak@uk-essen.de

Home

  1. Overview
  2. Relation to TFCE
  3. The R-package
  4. The SPM Toolbox
  5. The FSL extension
  6. The Nipype interface
  7. Notes on smoothness estimation

Citation and References

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