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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
<title>:: CV ::</title>
<link href="defaultstyles.css" rel="stylesheet" media="screen" />
<script type="text/javascript" src="branding.js"></script>
<script type="text/JavaScript" src="http://www.colorado.edu/templates/faculty-template/js/curvycorners.js"></script>
</head>
<body>
<div id="container">
<!--div id="ucb"><script type="text/javascript">ucbheader();</script></div-->
<div id="wrapper">
<div id="banner">
<h1>Sachin Pundhir, Ph.D.</h1>
</div>
<div id="nav">
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="publications.html">Publications</a></li>
<li><a href="cv.html">CV</a></li>
<li><a href="research.html">Research</a></li>
<li><a href="contact.html">Contact</a></li>
</ul>
</div>
<div id="page">
<div id="content">
<p><b>Research Interests</b>
<ul>
<li>Computational biology, big data analysis, non-coding RNA and transcriptional regulation</li>
<ol>
<li>RNA-seq and ChIP-seq data analysis using robust quantification and normalization methods to understand transcriptional regulation.</li>
<li>RNA splicing and expression analysis.</li>
<li>Statistical analysis using R packages.</li>
<li>Reproducibility analysis and quality control.</li>
<li>Machine learning approaches (HMM, SVM, random forest, regression analysis).</li>
</ol>
</ul></p>
<p><b>Education</b>
<table border=0 cellpadding=5 cellspacing=5 width=100%>
<tr><td valign="top" align="right" width=12%>2010-2013</td><td>
<b>Ph.D.</b> Bioinformatics, University of Copenhagen, Denmark<br>
<u>Thesis title</u>: In-silico detection of RNA-seq profiles in high-throughput sequencing data and their relation to non-coding RNAs.<br>
<u>Advisor</u>: Prof. Jan Gorodkin
</td>
</tr>
<!--tr><td valign="top" align="right">2002-2004</td><td>
<b>M.Sc.</b> Bioinformatics, C.C.S. University, India
</td>
</tr-->
</table></p>
<p><b>Employment</b>
<table border=0 cellpadding=5 cellspacing=5 width=100%>
<tr><td valign="top" align="right" width=12%>2018-Present</td><td>
<b>Senior Scientist</b>, BRIC and Rigshospitalet, Denmark
</td>
<tr>
<tr><td valign="top" align="right" width=12%>2014-2018</td><td>
<b>Post-doctoral fellow</b>, BRIC, University of Copenhagen, Denmark (with Prof. Bo Porse)
</td>
<tr>
<tr><td valign="top" align="right">2010-2013</td><td>
<b>Ph.D.</b>, RTH, University of Copenhagen, Denmark (with Prof. Jan Gorodkin)
</td>
</tr>
<!--tr><td valign="top" align="right">2008-2010</td><td>
<b>Researcher</b>, BIC, National Institute of Plant Genome Research, India
</td>
</tr>
<tr><td valign="top" align="right">2005-2008</td><td>
<b>Researcher</b>, BIC, Devi Ahilya University, India
</td>
</tr>
<tr><td valign="top" align="right">2004-2005</td><td>
<b>Instructor</b> (Bioinformatics and IT), Graphic Era Institute of Technology, India
</td>
</tr-->
</table></p>
<!--p>
My full CV is available <a href="doc/pundhir_cv.pdf" target="_blank">here</a>
</p-->
</div>
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