diff --git a/docs/release_notes/index.rst b/docs/release_notes/index.rst index c37c3bf..01cba3a 100644 --- a/docs/release_notes/index.rst +++ b/docs/release_notes/index.rst @@ -5,6 +5,14 @@ Release notes ======================== +**v0.8.0 2022-01-29** + +- Added `bins` parameter to :func:`piso.coverage` and :meth:`ArrayAccessor.coverage() ` +- Added `how` parameter to :func:`piso.coverage` and :meth:`ArrayAccessor.coverage() ` +- Added `result` parameter to :func:`piso.contains` and :meth:`ArrayAccessor.contains() ` +- Added `how` parameter to :func:`piso.contains` and :meth:`ArrayAccessor.contains() ` + + **v0.7.0 2021-11-20** Added the following methods @@ -28,6 +36,7 @@ The following methods were extended to accommodate intervals with *closed = "bot - :func:`piso.lookup` - :func:`piso.isdisjoint` (and :meth:`ArrayAccessor.isdisjoint() `) + **v0.5.0 2021-11-02** Added the following methods diff --git a/piso/accessor.py b/piso/accessor.py index 0813c5c..dba26f0 100644 --- a/piso/accessor.py +++ b/piso/accessor.py @@ -142,10 +142,12 @@ def issubset(self, *interval_arrays, squeeze=False): ) @Appender(docstrings.coverage_docstring, join="\n", indents=1) - def coverage(self, domain=None): + def coverage(self, domain=None, bins=False, how="fraction"): return intervalarray.coverage( self._interval_array, domain, + bins, + how, ) @Appender(docstrings.complement_docstring, join="\n", indents=1) @@ -156,11 +158,13 @@ def complement(self, domain=None): ) @Appender(docstrings.contains_docstring, join="\n", indents=1) - def contains(self, x, include_index=True): + def contains(self, x, include_index=True, result="cartesian", how="any"): return intervalarray.contains( self._interval_array, x, include_index, + result, + how, ) @Appender(docstrings.split_docstring, join="\n", indents=1) diff --git a/piso/docstrings/accessor.py b/piso/docstrings/accessor.py index e182740..175eb3a 100644 --- a/piso/docstrings/accessor.py +++ b/piso/docstrings/accessor.py @@ -591,11 +591,13 @@ def join_params(list_of_param_strings): coverage_docstring = """ -Calculates the fraction of a domain covered by a collection of intervals. +Calculates the size of a domain (or possibly multiple domains) covered by a collection of intervals. The intervals are contained in the array object the accessor belongs to. The (possibly overlapping) intervals may not, or partially, or wholly cover the domain. +Calculation over multiple domains is only possible when *bins* = True. + Parameters ---------- domain : :py:class:`tuple`, :class:`pandas.Interval`, :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray`, optional @@ -604,11 +606,19 @@ def join_params(list_of_param_strings): If *domain* is a tuple then it should specify lower and upper bounds, and be equivalent to a :class:`pandas.Interval`. If *domain* is a :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray` then the intervals it contains define a possibly disconnected domain. + If *bins* = True then *domain* must be :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray` with disjoint intervals. +bins : boolean, default False + If False, then the *domain* is interpreted as a single domain and returns one value. + If True, then *domain* is interpreted as disjoint bins over which coverage is calculated for each. +how : {"fraction", "sum"}, default "fraction" + If *how* = "fraction" then the result is a fraction of the size of the domain. + If *how* = "sum" then the result is the length of the domain covered. + + .. versionadded:: 0.8.0 Returns ---------- -float - a number between 0 and 1, representing the fraction of the domain covered. +float or :class:`pandas.Series` Examples ----------- @@ -630,11 +640,24 @@ def join_params(list_of_param_strings): >>> arr1.piso.coverage(pd.Interval(-10, 10)) 0.3 +>>> arr1.piso.coverage(pd.Interval(-10, 10), how="sum") +6 + >>> domain = pd.arrays.IntervalArray.from_tuples( -... [(4,6), (7, 9)], +... [(4,6), (7, 10)], ... ) >>> arr1.piso.coverage(domain) -0.5 +0.4 + +>>> arr1.piso.coverage(domain, bins=True) +(4, 6] 0.500000 +(7, 10] 0.333333 +dtype: float64 + +>>> arr1.piso.coverage(domain, bins=True, how="sum") +(4, 6] 1.0 +(7, 10] 1.0 +dtype: float64 """ complement_docstring = """ @@ -736,25 +759,39 @@ def join_params(list_of_param_strings): contains_docstring = """ -Check pair-wise if a set of intervals, belonging to the object the accessor belongs to, contains a set of values. +Evaluates the intersection of a set of intervals with a set of points. -Returns a 2-dimensional boolean mask *M* of shape *(m,n)* where *m* is the number of intervals, and -*n* is the number of points. The element in the i-th row and j-th column is True if +The format of the result is dependent on the *result* parameter. If *result = "cartesian"* then the +the function returns a 2-dimensional boolean mask *M* of shape *(m,n)* where *m* is the number of +intervals, and *n* is the number of points. The element in the i-th row and j-th column is True if the i-th interval contains the j-th point. +If *result = "points"* then the result is a 1-dimensional boolean mask of length *n*. +If *result = "intervals"* then the result is a 1-dimensional boolean mask of length *m*. + Parameters ---------- +interval_array : :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray` + Contains the intervals. May be left-closed, right-closed, both, or neither. x : scalar, or array-like of scalars - Values in *x* should belong to the same domain as the intervals in *interval_array*. - May be left-closed, right-closed, both, or neither. + Values in *x* should belong to the same domain as the intervals contained by the object the + accessor belongs to. include_index : boolean, default True Indicates whether to return a :class:`numpy.ndarray` or :class:`pandas.DataFrame` indexed by *interval_array* and column names equal to *x* +result : {"cartesian", "points", "intervals"}, default "cartesian" + If *result* = "cartesian" then the result will be two dimensional, otherwise it will be + one dimensional. +how : {"any", "all"}, default "any" + Only relevant if *result* is not "cartesian". This parameter indicates either: + - a True value means any or all points are contained within an interval, or + - a True value means any or all intervals contained a point. + Which of these interpretations is dependent on the *result* parameter. Returns ---------- -:class:`numpy.ndarray` or :class:`pandas.DataFrame` - Two dimensional and boolean valued. Return type dependent on *include_index*. +:class:`numpy.ndarray`, :class:`pandas.DataFrame` or :class:`pandas.Series` + One, or two, dimensional and boolean valued. Return type dependent on *include_index* and *result*. Examples ----------- @@ -781,6 +818,25 @@ def join_params(list_of_param_strings): array([[False, True, True, True], [False, False, True, True]]) +>>> arr.piso.contains([0, 1, 3, 4], result="points") +0 False +1 True +3 True +4 True +dtype: bool + +>>> arr.piso.contains([0, 1, 3, 4], result="points", how="all") +0 False +1 False +3 True +4 True +dtype: bool + +>>> arr.piso.contains([0, 1, 3, 4], result="intervals") +(0, 4] True +(2, 5] True +dtype: bool + >>> pd.IntervalIndex.from_tuples([(0,2)]).piso.contains(1, include_index=False) array([[ True]]) """ diff --git a/piso/docstrings/intervalarray.py b/piso/docstrings/intervalarray.py index 1b5fdcf..df8b717 100644 --- a/piso/docstrings/intervalarray.py +++ b/piso/docstrings/intervalarray.py @@ -596,7 +596,9 @@ def join_params(list_of_param_strings): coverage_docstring = """ -Calculates the fraction of a domain covered by a collection of intervals. +Calculates the fraction of a domain (or possibly multiple domains) covered by a collection of intervals. + +Calculation over multiple domains is only possible when *bins* = True. Parameters ---------- @@ -609,11 +611,19 @@ def join_params(list_of_param_strings): If *domain* is a tuple then it should specify lower and upper bounds, and be equivalent to a :class:`pandas.Interval`. If *domain* is a :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray` then the intervals it contains define a possibly disconnected domain. + If *bins* = True then *domain* must be :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray` with disjoint intervals. +bins : boolean, default False + If False, then the *domain* is interpreted as a single domain and returns one value. + If True, then *domain* is interpreted as disjoint bins over which coverage is calculated for each. +how : {"fraction", "sum"}, default "fraction" + If *how* = "fraction" then the result is a fraction of the size of the domain. + If *how* = "sum" then the result is the length of the domain covered. + + .. versionadded:: 0.8.0 Returns ---------- -float - a number between 0 and 1, representing the fraction of the domain covered. +float or :class:`pandas.Series` Examples ----------- @@ -634,11 +644,24 @@ def join_params(list_of_param_strings): >>> piso.coverage(arr1, pd.Interval(-10, 10)) 0.3 +>>> piso.coverage(arr1, pd.Interval(-10, 10), how="sum") +6 + >>> domain = pd.arrays.IntervalArray.from_tuples( -... [(4,6), (7, 9)], +... [(4,6), (7, 10)], ... ) >>> piso.coverage(arr1, domain) -0.5 +0.4 + +>>> piso.coverage(arr1, domain, bins=True) +(4, 6] 0.500000 +(7, 10] 0.333333 +dtype: float64 + +>>> piso.coverage(arr1, domain, bins=True, how="sum") +(4, 6] 1.0 +(7, 10] 1.0 +dtype: float64 """ @@ -743,12 +766,16 @@ def join_params(list_of_param_strings): contains_docstring = """ -Check pair-wise if a set of intervals contains a set of values +Evaluates the intersection of a set of intervals with a set of points. -Returns a 2-dimensional boolean mask *M* of shape *(m,n)* where *m* is the number of intervals, and -*n* is the number of points. The element in the i-th row and j-th column is True if +The format of the result is dependent on the *result* parameter. If *result = "cartesian"* then the +the function returns a 2-dimensional boolean mask *M* of shape *(m,n)* where *m* is the number of +intervals, and *n* is the number of points. The element in the i-th row and j-th column is True if the i-th interval contains the j-th point. +If *result = "points"* then the result is a 1-dimensional boolean mask of length *n*. +If *result = "intervals"* then the result is a 1-dimensional boolean mask of length *m*. + Parameters ---------- interval_array : :class:`pandas.IntervalIndex` or :class:`pandas.arrays.IntervalArray` @@ -758,11 +785,20 @@ def join_params(list_of_param_strings): include_index : boolean, default True Indicates whether to return a :class:`numpy.ndarray` or :class:`pandas.DataFrame` indexed by *interval_array* and column names equal to *x* +result : {"cartesian", "points", "intervals"}, default "cartesian" + If *result* = "cartesian" then the result will be two dimensional, otherwise it will be + one dimensional. +how : {"any", "all"}, default "any" + Only relevant if *result* is not "cartesian". This parameter indicates either: + - a True value means any or all points are contained within an interval, or + - a True value means any or all intervals contained a point. + Which of these interpretations is dependent on the *result* parameter. + Returns ---------- -:class:`numpy.ndarray` or :class:`pandas.DataFrame` - Two dimensional and boolean valued. Return type dependent on *include_index*. +:class:`numpy.ndarray`, :class:`pandas.DataFrame` or :class:`pandas.Series` + One, or two, dimensional and boolean valued. Return type dependent on *include_index* and *result*. Examples ----------- @@ -788,6 +824,25 @@ def join_params(list_of_param_strings): array([[False, True, True, True], [False, False, True, True]]) +>>> piso.contains(arr, [0, 1, 3, 4], result="points") +0 False +1 True +3 True +4 True +dtype: bool + +>>> piso.contains(arr, [0, 1, 3, 4], result="points", how="all") +0 False +1 False +3 True +4 True +dtype: bool + +>>> piso.contains(arr, [0, 1, 3, 4], result="intervals") +(0, 4] True +(2, 5] True +dtype: bool + >>> piso.contains(pd.IntervalIndex.from_tuples([(0,2)]), 1, include_index=False) array([[ True]]) """ diff --git a/piso/intervalarray.py b/piso/intervalarray.py index 692360d..3650946 100644 --- a/piso/intervalarray.py +++ b/piso/intervalarray.py @@ -178,15 +178,30 @@ def _get_domain_tuple(interval_array, domain): @Appender(docstrings.coverage_docstring, join="\n", indents=1) -def coverage(interval_array, domain=None): +def coverage(interval_array, domain=None, bins=False, how="fraction"): + assert how in ("fraction", "sum") + + def _validate_domain(): + if not isinstance(domain, (pd.IntervalIndex, pd.arrays.IntervalArray)): + raise ValueError( + "If bins argument is true then domain parameter must be a pandas IntervalIndex or IntervalArray." + ) + if not isdisjoint(domain): + raise ValueError( + "If bins argument is true then domain parameter must represent disjoint intervals." + ) + stepfunction = _interval_x_to_stairs(interval_array).make_boolean() - if isinstance(domain, (pd.IntervalIndex, pd.arrays.IntervalArray)): + if bins: + _validate_domain() + adjusted_domain = stepfunction.slice(pd.IntervalIndex(domain)) + elif isinstance(domain, (pd.IntervalIndex, pd.arrays.IntervalArray)): domain = _interval_x_to_stairs(domain) - result = stepfunction.where(domain).mean() + adjusted_domain = stepfunction.where(domain) else: domain = _get_domain_tuple(interval_array, domain) - result = stepfunction.clip(*domain).mean() - return result + adjusted_domain = stepfunction.clip(*domain) + return adjusted_domain.mean() if how == "fraction" else adjusted_domain.integral() @Appender(docstrings.complement_docstring, join="\n", indents=1) @@ -203,7 +218,9 @@ def complement(interval_array, domain=None): @Appender(docstrings.contains_docstring, join="\n", indents=1) -def contains(interval_array, x, include_index=True): +def contains(interval_array, x, include_index=True, result="cartesian", how="any"): + assert result in ("cartesian", "intervals", "points") + assert how in ("any", "all") starts = interval_array.left.values ends = interval_array.right.values x = pd.Series(x).values @@ -213,10 +230,18 @@ def contains(interval_array, x, include_index=True): left_compare = ( np.greater_equal if interval_array.closed in ("left", "both") else np.greater ) - result = (right_compare.outer(x, ends) & left_compare.outer(x, starts)).transpose() + calc = (right_compare.outer(x, ends) & left_compare.outer(x, starts)).transpose() + if result != "cartesian": + logical_method = np.logical_or if how == "any" else np.logical_and + axis = 0 if result == "points" else 1 + calc = logical_method.reduce(calc, axis=axis) if include_index: - return pd.DataFrame(result, index=interval_array, columns=x) - return result + if result == "cartesian": + calc = pd.DataFrame(calc, index=interval_array, columns=x) + else: + index = x if result == "points" else interval_array + calc = pd.Series(calc, index=index) + return calc @Appender(docstrings.split_docstring, join="\n", indents=1) diff --git a/poetry.lock b/poetry.lock index 152f245..1bd444b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -16,20 +16,37 @@ python-versions = "*" [[package]] name = "argon2-cffi" -version = "21.1.0" +version = "21.3.0" description = "The secure Argon2 password hashing algorithm." category = "dev" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" [package.dependencies] -cffi = ">=1.0.0" +argon2-cffi-bindings = "*" +dataclasses = {version = "*", markers = "python_version < \"3.7\""} +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "furo", "wheel", "pre-commit"] -docs = ["sphinx", "furo"] +dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] +docs = ["sphinx", "sphinx-notfound-page", "furo"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] +[[package]] +name = "argon2-cffi-bindings" +version = "21.2.0" +description = "Low-level CFFI bindings for Argon2" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cffi = ">=1.0.1" + +[package.extras] +dev = ["pytest", "cogapp", "pre-commit", "wheel"] +tests = ["pytest"] + [[package]] name = "async-generator" version = "1.10" @@ -48,17 +65,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "attrs" -version = "21.2.0" +version = "21.4.0" description = "Classes Without Boilerplate" category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "babel" @@ -79,24 +96,9 @@ category = "dev" optional = false python-versions = "*" -[[package]] -name = "backports.entry-points-selectable" -version = "1.1.0" -description = "Compatibility shim providing selectable entry points for older implementations" -category = "dev" -optional = false -python-versions = ">=2.7" - -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - -[package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"] - [[package]] name = "black" -version = "21.9b0" +version = "21.12b0" description = "The uncompromising code formatter." category = "dev" optional = false @@ -108,9 +110,8 @@ dataclasses = {version = ">=0.6", markers = "python_version < \"3.7\""} mypy-extensions = ">=0.4.3" pathspec = ">=0.9.0,<1" platformdirs = ">=2" -regex = ">=2020.1.8" tomli = ">=0.2.6,<2.0.0" -typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\""} +typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""} typing-extensions = [ {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}, {version = "!=3.10.0.1", markers = "python_version >= \"3.10\""}, @@ -118,9 +119,9 @@ typing-extensions = [ [package.extras] colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"] +d = ["aiohttp (>=3.7.4)"] jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] -python2 = ["typed-ast (>=1.4.2)"] +python2 = ["typed-ast (>=1.4.3)"] uvloop = ["uvloop (>=0.15.2)"] [[package]] @@ -138,7 +139,7 @@ webencodings = "*" [[package]] name = "certifi" -version = "2021.5.30" +version = "2021.10.8" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false @@ -146,7 +147,7 @@ python-versions = "*" [[package]] name = "cffi" -version = "1.14.6" +version = "1.15.0" description = "Foreign Function Interface for Python calling C code." category = "dev" optional = false @@ -165,7 +166,7 @@ python-versions = ">=3.6.1" [[package]] name = "charset-normalizer" -version = "2.0.6" +version = "2.0.10" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false @@ -176,7 +177,7 @@ unicode_backport = ["unicodedata2"] [[package]] name = "click" -version = "8.0.1" +version = "8.0.3" description = "Composable command line interface toolkit" category = "dev" optional = false @@ -196,7 +197,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "6.0.2" +version = "6.2" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -210,14 +211,11 @@ toml = ["tomli"] [[package]] name = "cycler" -version = "0.10.0" +version = "0.11.0" description = "Composable style cycles" category = "main" optional = false -python-versions = "*" - -[package.dependencies] -six = "*" +python-versions = ">=3.6" [[package]] name = "dataclasses" @@ -229,7 +227,7 @@ python-versions = ">=3.6, <3.7" [[package]] name = "decorator" -version = "5.1.0" +version = "5.1.1" description = "Decorators for Humans" category = "dev" optional = false @@ -245,7 +243,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "distlib" -version = "0.3.3" +version = "0.3.4" description = "Distribution utilities" category = "dev" optional = false @@ -269,7 +267,7 @@ python-versions = ">=2.7" [[package]] name = "filelock" -version = "3.3.0" +version = "3.4.1" description = "A platform independent file lock." category = "dev" optional = false @@ -281,32 +279,32 @@ testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-co [[package]] name = "flake8" -version = "3.9.2" +version = "4.0.1" description = "the modular source code checker: pep8 pyflakes and co" category = "dev" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +python-versions = ">=3.6" [package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +importlib-metadata = {version = "<4.3", markers = "python_version < \"3.8\""} mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.7.0,<2.8.0" -pyflakes = ">=2.3.0,<2.4.0" +pycodestyle = ">=2.8.0,<2.9.0" +pyflakes = ">=2.4.0,<2.5.0" [[package]] name = "identify" -version = "2.3.0" +version = "2.4.4" description = "File identification library for Python" category = "dev" optional = false python-versions = ">=3.6.1" [package.extras] -license = ["editdistance-s"] +license = ["ukkonen"] [[package]] name = "idna" -version = "3.2" +version = "3.3" description = "Internationalized Domain Names in Applications (IDNA)" category = "dev" optional = false @@ -314,7 +312,7 @@ python-versions = ">=3.5" [[package]] name = "imagesize" -version = "1.2.0" +version = "1.3.0" description = "Getting image size from png/jpeg/jpeg2000/gif file" category = "dev" optional = false @@ -322,7 +320,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.8.1" +version = "4.2.0" description = "Read metadata from Python packages" category = "dev" optional = false @@ -334,12 +332,11 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -perf = ["ipython"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] name = "importlib-resources" -version = "5.2.2" +version = "5.2.3" description = "Read resources from Python packages" category = "dev" optional = false @@ -350,7 +347,7 @@ zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] [[package]] name = "iniconfig" @@ -362,7 +359,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "5.5.5" +version = "5.5.6" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -371,6 +368,7 @@ python-versions = ">=3.5" [package.dependencies] appnope = {version = "*", markers = "platform_system == \"Darwin\""} ipython = ">=5.0.0" +ipython-genutils = "*" jupyter-client = "*" tornado = ">=4.2" traitlets = ">=4.1.0" @@ -380,7 +378,7 @@ test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "jedi (<=0.17.2)"] [[package]] name = "ipython" -version = "7.16.1" +version = "7.16.3" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -391,7 +389,7 @@ appnope = {version = "*", markers = "sys_platform == \"darwin\""} backcall = "*" colorama = {version = "*", markers = "sys_platform == \"win32\""} decorator = "*" -jedi = ">=0.10" +jedi = ">=0.10,<=0.17.2" pexpect = {version = "*", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" @@ -419,7 +417,7 @@ python-versions = "*" [[package]] name = "isort" -version = "5.9.3" +version = "5.10.1" description = "A Python utility / library to sort Python imports." category = "dev" optional = false @@ -433,22 +431,22 @@ plugins = ["setuptools"] [[package]] name = "jedi" -version = "0.18.0" +version = "0.17.2" description = "An autocompletion tool for Python that can be used for text editors." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.dependencies] -parso = ">=0.8.0,<0.9.0" +parso = ">=0.7.0,<0.8.0" [package.extras] -qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] -testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] +qa = ["flake8 (==3.7.9)"] +testing = ["Django (<3.1)", "colorama", "docopt", "pytest (>=3.9.0,<5.0.0)"] [[package]] name = "jinja2" -version = "3.0.2" +version = "3.0.3" description = "A very fast and expressive template engine." category = "dev" optional = false @@ -479,7 +477,7 @@ format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- [[package]] name = "jupyter-client" -version = "7.0.5" +version = "7.1.2" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false @@ -500,7 +498,7 @@ test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-comm [[package]] name = "jupyter-core" -version = "4.8.1" +version = "4.9.1" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false @@ -591,7 +589,7 @@ python-versions = "*" [[package]] name = "nbclient" -version = "0.5.4" +version = "0.5.9" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" optional = false @@ -605,9 +603,9 @@ nest-asyncio = "*" traitlets = ">=4.2" [package.extras] -dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] [[package]] name = "nbconvert" @@ -659,7 +657,7 @@ test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"] [[package]] name = "nbsphinx" -version = "0.8.7" +version = "0.8.8" description = "Jupyter Notebook Tools for Sphinx" category = "dev" optional = false @@ -675,7 +673,7 @@ traitlets = "*" [[package]] name = "nest-asyncio" -version = "1.5.1" +version = "1.5.4" description = "Patch asyncio to allow nested event loops" category = "dev" optional = false @@ -691,7 +689,7 @@ python-versions = "*" [[package]] name = "notebook" -version = "6.4.4" +version = "6.4.8" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -706,9 +704,10 @@ jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" nbconvert = "*" nbformat = "*" +nest-asyncio = ">=1.5" prometheus-client = "*" pyzmq = ">=17" -Send2Trash = ">=1.5.0" +Send2Trash = ">=1.8.0" terminado = ">=0.8.3" tornado = ">=6.1" traitlets = ">=4.2.1" @@ -743,14 +742,14 @@ testing = ["matplotlib", "pytest", "pytest-cov"] [[package]] name = "packaging" -version = "21.0" +version = "21.3" description = "Core utilities for Python packages" category = "dev" optional = false python-versions = ">=3.6" [package.dependencies] -pyparsing = ">=2.0.2" +pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" @@ -778,15 +777,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "parso" -version = "0.8.2" +version = "0.7.1" description = "A Python Parser" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] -qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] -testing = ["docopt", "pytest (<6.0.0)"] +testing = ["docopt", "pytest (>=3.0.7)"] [[package]] name = "pathspec" @@ -817,7 +815,7 @@ python-versions = "*" [[package]] name = "pillow" -version = "8.3.2" +version = "8.4.0" description = "Python Imaging Library (Fork)" category = "main" optional = false @@ -852,7 +850,7 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "pre-commit" -version = "2.15.0" +version = "2.17.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false @@ -862,7 +860,7 @@ python-versions = ">=3.6.1" cfgv = ">=2.0.0" identify = ">=1.0.0" importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} -importlib-resources = {version = "*", markers = "python_version < \"3.7\""} +importlib-resources = {version = "<5.3", markers = "python_version < \"3.7\""} nodeenv = ">=0.11.1" pyyaml = ">=5.1" toml = "*" @@ -870,11 +868,11 @@ virtualenv = ">=20.0.8" [[package]] name = "prometheus-client" -version = "0.11.0" +version = "0.13.1" description = "Python client for the Prometheus monitoring system." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.extras] twisted = ["twisted"] @@ -900,23 +898,23 @@ python-versions = "*" [[package]] name = "py" -version = "1.10.0" +version = "1.11.0" description = "library with cross-python path, ini-parsing, io, code, log facilities" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pycodestyle" -version = "2.7.0" +version = "2.8.0" description = "Python style guide checker" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pycparser" -version = "2.20" +version = "2.21" description = "C parser in Python" category = "dev" optional = false @@ -924,7 +922,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pyflakes" -version = "2.3.1" +version = "2.4.0" description = "passive checker of Python programs" category = "dev" optional = false @@ -932,7 +930,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pygments" -version = "2.10.0" +version = "2.11.2" description = "Pygments is a syntax highlighting package written in Python." category = "dev" optional = false @@ -940,11 +938,14 @@ python-versions = ">=3.5" [[package]] name = "pyparsing" -version = "2.4.7" +version = "3.0.7" description = "Python parsing module" category = "main" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = ">=3.6" + +[package.extras] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" @@ -1012,7 +1013,7 @@ python-versions = "*" [[package]] name = "pywin32" -version = "301" +version = "303" description = "Python for Window Extensions" category = "dev" optional = false @@ -1020,7 +1021,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "1.1.4" +version = "2.0.1" description = "Pseudo terminal support for Windows from Python." category = "dev" optional = false @@ -1028,11 +1029,11 @@ python-versions = ">=3.6" [[package]] name = "pyyaml" -version = "5.4.1" +version = "6.0" description = "YAML parser and emitter for Python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">=3.6" [[package]] name = "pyzmq" @@ -1046,17 +1047,9 @@ python-versions = ">=3.6" cffi = {version = "*", markers = "implementation_name == \"pypy\""} py = {version = "*", markers = "implementation_name == \"pypy\""} -[[package]] -name = "regex" -version = "2021.9.30" -description = "Alternative regular expression module, to replace re." -category = "dev" -optional = false -python-versions = "*" - [[package]] name = "requests" -version = "2.26.0" +version = "2.27.1" description = "Python HTTP for Humans." category = "dev" optional = false @@ -1095,7 +1088,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "snowballstemmer" -version = "2.1.0" +version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." category = "dev" optional = false @@ -1103,7 +1096,7 @@ python-versions = "*" [[package]] name = "sphinx" -version = "4.2.0" +version = "4.3.2" description = "Python documentation generator" category = "dev" optional = false @@ -1129,7 +1122,7 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.900)", "docutils-stubs", "types-typed-ast", "types-pkg-resources", "types-requests"] +lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.920)", "docutils-stubs", "types-typed-ast", "types-pkg-resources", "types-requests"] test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] [[package]] @@ -1221,7 +1214,7 @@ test = ["pytest"] [[package]] name = "staircase" -version = "2.1.0" +version = "2.3.0" description = "A data analysis package based on modelling and manipulation of mathematical step functions. Strongly aligned with pandas." category = "main" optional = false @@ -1235,11 +1228,11 @@ pytz = "*" [[package]] name = "terminado" -version = "0.12.1" +version = "0.13.0" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = "*" [package.dependencies] ptyprocess = {version = "*", markers = "os_name != \"nt\""} @@ -1270,7 +1263,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "tomli" -version = "1.2.1" +version = "1.2.3" description = "A lil' TOML parser" category = "dev" optional = false @@ -1286,7 +1279,7 @@ python-versions = ">= 3.5" [[package]] name = "tox" -version = "3.24.4" +version = "3.24.5" description = "tox is a generic virtualenv management and test command line tool" category = "dev" optional = false @@ -1305,7 +1298,7 @@ virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2, [package.extras] docs = ["pygments-github-lexers (>=0.0.5)", "sphinx (>=2.0.0)", "sphinxcontrib-autoprogram (>=0.1.5)", "towncrier (>=18.5.0)"] -testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "psutil (>=5.6.1)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)", "pytest-xdist (>=1.22.2)", "pathlib2 (>=2.3.3)"] +testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)", "psutil (>=5.6.1)", "pathlib2 (>=2.3.3)"] [[package]] name = "traitlets" @@ -1325,23 +1318,23 @@ test = ["pytest", "mock"] [[package]] name = "typed-ast" -version = "1.4.3" +version = "1.5.2" description = "a fork of Python 2 and 3 ast modules with type comment support" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "typing-extensions" -version = "3.10.0.2" -description = "Backported and Experimental Type Hints for Python 3.5+" +version = "4.0.1" +description = "Backported and Experimental Type Hints for Python 3.6+" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "urllib3" -version = "1.26.7" +version = "1.26.8" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "dev" optional = false @@ -1354,23 +1347,22 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] name = "virtualenv" -version = "20.8.1" +version = "20.13.0" description = "Virtual Python Environment builder" category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [package.dependencies] -"backports.entry-points-selectable" = ">=1.0.4" distlib = ">=0.3.1,<1" -filelock = ">=3.0.0,<4" +filelock = ">=3.2,<4" importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} importlib-resources = {version = ">=1.0", markers = "python_version < \"3.7\""} platformdirs = ">=2,<3" six = ">=1.9.0,<2" [package.extras] -docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=19.9.0rc1)"] +docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"] testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"] [[package]] @@ -1419,17 +1411,31 @@ appnope = [ {file = "appnope-0.1.2.tar.gz", hash = "sha256:dd83cd4b5b460958838f6eb3000c660b1f9caf2a5b1de4264e941512f603258a"}, ] argon2-cffi = [ - {file = "argon2-cffi-21.1.0.tar.gz", hash = "sha256:f710b61103d1a1f692ca3ecbd1373e28aa5e545ac625ba067ff2feca1b2bb870"}, - {file = "argon2_cffi-21.1.0-cp35-abi3-macosx_10_14_x86_64.whl", hash = "sha256:217b4f0f853ccbbb5045242946ad2e162e396064575860141b71a85eb47e475a"}, - {file = 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b/tests/test_single_interval_array.py index 7cd41e4..3ffb059 100644 --- a/tests/test_single_interval_array.py +++ b/tests/test_single_interval_array.py @@ -39,12 +39,12 @@ def get_package_method(function): }[function] -def perform_op(*args, how, function, **kwargs): - # how = "supplied, accessor, or package" - if how == "accessor": +def perform_op(*args, method, function, **kwargs): + # method = "supplied, accessor, or package" + if method == "accessor": self, *args = args return get_accessor_method(self, function)(*args, **kwargs) - elif how == "package": + elif method == "package": return get_package_method(function)(*args, **kwargs) else: return function(*args, **kwargs) @@ -119,16 +119,16 @@ def assert_interval_array_equal(interval_array, expected, interval_index): ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_union(closed, interval_index, return_type, how): +def test_union(closed, interval_index, return_type, method): interval_array = make_ia1(interval_index, closed) # result = piso_intervalarray.union(interval_array, return_type) result = perform_op( interval_array, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.union, ) expected = pd.arrays.IntervalArray.from_tuples( @@ -158,17 +158,17 @@ def test_union(closed, interval_index, return_type, how): ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) def test_intersection_overlaps_all_empty_result( - closed, interval_index, return_type, how + closed, interval_index, return_type, method ): interval_array = make_ia1(interval_index, closed) result = perform_op( interval_array, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.intersection, ) expected = pd.arrays.IntervalArray([], closed=closed) @@ -195,17 +195,17 @@ def test_intersection_overlaps_all_empty_result( ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) def test_intersection_overlaps_all_nonempty_result( - closed, interval_index, return_type, how + closed, interval_index, return_type, method ): interval_array = make_ia2(interval_index, closed=closed) result = perform_op( interval_array, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.intersection, ) expected = pd.arrays.IntervalArray.from_tuples([(3, 4)], closed=closed) @@ -232,16 +232,16 @@ def test_intersection_overlaps_all_nonempty_result( ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_intersection_overlaps_2(closed, interval_index, return_type, how): +def test_intersection_overlaps_2(closed, interval_index, return_type, method): interval_array = make_ia1(interval_index, closed) result = perform_op( interval_array, min_overlaps=2, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.intersection, ) expected = pd.arrays.IntervalArray.from_tuples([(2, 5)], closed=closed) @@ -268,16 +268,16 @@ def test_intersection_overlaps_2(closed, interval_index, return_type, how): ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_intersection_overlaps_3(closed, interval_index, return_type, how): +def test_intersection_overlaps_3(closed, interval_index, return_type, method): interval_array = make_ia1(interval_index, closed) result = perform_op( interval_array, min_overlaps=3, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.intersection, ) expected = pd.arrays.IntervalArray.from_tuples([(3, 4)], closed=closed) @@ -304,15 +304,15 @@ def test_intersection_overlaps_3(closed, interval_index, return_type, how): ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_symmetric_difference(closed, interval_index, return_type, how): +def test_symmetric_difference(closed, interval_index, return_type, method): interval_array = make_ia1(interval_index, closed) result = perform_op( interval_array, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.symmetric_difference, ) expected = pd.arrays.IntervalArray.from_tuples( @@ -342,16 +342,18 @@ def test_symmetric_difference(closed, interval_index, return_type, how): ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_symmetric_difference_min_overlaps_3(closed, interval_index, return_type, how): +def test_symmetric_difference_min_overlaps_3( + closed, interval_index, return_type, method +): interval_array = make_ia1(interval_index, closed) result = perform_op( interval_array, min_overlaps=3, return_type=return_type, - how=how, + method=method, function=piso_intervalarray.symmetric_difference, ) expected = pd.arrays.IntervalArray.from_tuples( @@ -381,18 +383,18 @@ def test_symmetric_difference_min_overlaps_3(closed, interval_index, return_type ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) def test_symmetric_difference_min_overlaps_all_1( - closed, interval_index, return_type, how + closed, interval_index, return_type, method ): interval_array = make_ia1(interval_index, closed) result = perform_op( interval_array, min_overlaps="all", return_type=return_type, - how=how, + method=method, function=piso_intervalarray.symmetric_difference, ) expected = pd.arrays.IntervalArray.from_tuples( @@ -422,18 +424,18 @@ def test_symmetric_difference_min_overlaps_all_1( ["infer", pd.arrays.IntervalArray, pd.IntervalIndex], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) def test_symmetric_difference_min_overlaps_all_2( - closed, interval_index, return_type, how + closed, interval_index, return_type, method ): interval_array = make_ia2(interval_index, closed) result = perform_op( interval_array, min_overlaps="all", return_type=return_type, - how=how, + method=method, function=piso_intervalarray.symmetric_difference, ) expected = pd.arrays.IntervalArray.from_tuples( @@ -498,16 +500,18 @@ def make_date(x): ["timestamp", "numpy", "datetime", "timedelta", None], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) def test_isdisjoint_left_right_neither( - interval_index, tuples, expected, closed, date_type, how + interval_index, tuples, expected, closed, date_type, method ): interval_array = make_ia_from_tuples(interval_index, tuples, closed) interval_array = map_to_dates(interval_array, date_type) - result = perform_op(interval_array, how=how, function=piso_intervalarray.isdisjoint) + result = perform_op( + interval_array, method=method, function=piso_intervalarray.isdisjoint + ) assert result == expected @@ -535,15 +539,16 @@ def test_isdisjoint_left_right_neither( ["timestamp", "numpy", "datetime", "timedelta", None], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_isdisjoint_both(interval_index, tuples, expected, date_type, how): +def test_isdisjoint_both(interval_index, tuples, expected, date_type, method): interval_array = make_ia_from_tuples(interval_index, tuples, "both") interval_array = map_to_dates(interval_array, date_type) - print(interval_array) - result = perform_op(interval_array, how=how, function=piso_intervalarray.isdisjoint) + result = perform_op( + interval_array, method=method, function=piso_intervalarray.isdisjoint + ) assert result == expected @@ -552,14 +557,14 @@ def test_isdisjoint_both(interval_index, tuples, expected, date_type, how): [True, False], ) @pytest.mark.parametrize( - "domain, expected", + "domain, expected_fraction, expected_sum", [ - (None, 10 / 12), - ((0, 10), 0.8), - (pd.Interval(0, 10), 0.8), - ((15, 20), 0), - (pd.IntervalIndex.from_tuples([(0, 6), (10, 12)]), 1), - (pd.IntervalIndex.from_tuples([(6, 7), (9, 10)]), 0), + (None, 10 / 12, 10), + ((0, 10), 0.8, 8), + (pd.Interval(0, 10), 0.8, 8), + ((15, 20), 0, 0), + (pd.IntervalIndex.from_tuples([(0, 6), (10, 12)]), 1, 8), + (pd.IntervalIndex.from_tuples([(6, 7), (9, 10)]), 0, 0), ], ) @pytest.mark.parametrize( @@ -567,19 +572,27 @@ def test_isdisjoint_both(interval_index, tuples, expected, date_type, how): ["left", "right"], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_coverage(interval_index, domain, expected, closed, how): +@pytest.mark.parametrize( + "how", + ["fraction", "sum"], +) +def test_coverage( + interval_index, domain, expected_fraction, expected_sum, closed, method, how +): if hasattr(domain, "set_closed"): domain = domain.set_closed(closed) ia = make_ia1(interval_index, closed) result = perform_op( ia, - how=how, + method=method, function=piso_intervalarray.coverage, domain=domain, + how=how, ) + expected = expected_fraction if how == "fraction" else expected_sum assert result == expected @@ -587,19 +600,60 @@ def test_coverage(interval_index, domain, expected, closed, how): "interval_index", [True, False], ) +@pytest.mark.parametrize( + "domain_interval_index", + [True, False], +) @pytest.mark.parametrize( "closed", ["left", "right"], ) +@pytest.mark.parametrize( + "method", + ["supplied", "accessor", "package"], +) @pytest.mark.parametrize( "how", + ["fraction", "sum"], +) +def test_coverage_bins(interval_index, domain_interval_index, closed, method, how): + domain = pd.arrays.IntervalArray.from_tuples( + [(0, 2), (3, 7), (8, 10)], + closed=closed, + ) + if domain_interval_index: + domain = pd.IntervalIndex(domain) + ia = make_ia1(interval_index, closed) + result = perform_op( + ia, + method=method, + function=piso_intervalarray.coverage, + domain=domain, + bins=True, + how=how, + ) + values = [1, 0.75, 0.5] if how == "fraction" else [2.0, 3.0, 1.0] + expected = pd.Series(values, index=domain) + pd.testing.assert_series_equal(result, expected) + + +@pytest.mark.parametrize( + "interval_index", + [True, False], +) +@pytest.mark.parametrize( + "closed", + ["left", "right"], +) +@pytest.mark.parametrize( + "method", ["supplied", "accessor", "package"], ) -def test_coverage_edge_case(interval_index, closed, how): +def test_coverage_edge_case(interval_index, closed, method): ia = make_ia_from_tuples(interval_index, [], closed) result = perform_op( ia, - how=how, + method=method, function=piso_intervalarray.coverage, domain=None, ) @@ -615,21 +669,71 @@ def test_coverage_edge_case(interval_index, closed, how): ["left", "right"], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_coverage_exception(interval_index, closed, how): +def test_coverage_exception(interval_index, closed, method): domain = (1, 2, 3) with pytest.raises(ValueError): ia = make_ia1(interval_index, closed) perform_op( ia, - how=how, + method=method, function=piso_intervalarray.coverage, domain=domain, ) +@pytest.mark.parametrize( + "interval_index", + [True, False], +) +@pytest.mark.parametrize( + "closed", + ["left", "right"], +) +@pytest.mark.parametrize( + "method", + ["supplied", "accessor", "package"], +) +def test_coverage_exception2(interval_index, closed, method): + domain = (1, 2) + with pytest.raises(ValueError): + ia = make_ia1(interval_index, closed) + perform_op( + ia, + method=method, + function=piso_intervalarray.coverage, + domain=domain, + bins=True, + ) + + +@pytest.mark.parametrize( + "interval_index", + [True, False], +) +@pytest.mark.parametrize( + "closed", + ["left", "right"], +) +@pytest.mark.parametrize( + "method", + ["supplied", "accessor", "package"], +) +def test_coverage_exception3(interval_index, closed, method): + domain = pd.IntervalIndex.from_tuples([(1, 3), (2, 4)]) + with pytest.raises(ValueError): + ia = make_ia1(interval_index, closed) + perform_op( + ia, + method=method, + function=piso_intervalarray.coverage, + domain=domain, + bins=True, + ) + + @pytest.mark.parametrize( "interval_index", [True, False], @@ -652,17 +756,17 @@ def test_coverage_exception(interval_index, closed, how): ["left", "right"], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) -def test_complement(interval_index, domain, expected_tuples, closed, how): +def test_complement(interval_index, domain, expected_tuples, closed, method): if hasattr(domain, "set_closed"): domain = domain.set_closed(closed) ia = make_ia1(interval_index, closed) expected = make_ia_from_tuples(False, expected_tuples, closed) result = perform_op( ia, - how=how, + method=method, function=piso_intervalarray.complement, domain=domain, ) @@ -711,20 +815,20 @@ def test_complement(interval_index, domain, expected_tuples, closed, how): ], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) @pytest.mark.parametrize( "include_index", [True, False], ) -def test_contains(interval_index, x, closed, expected, how, include_index): +def test_contains(interval_index, x, closed, expected, method, include_index): ia = make_ia2(interval_index, closed) result = perform_op( ia, x, include_index, - how=how, + method=method, function=piso_intervalarray.contains, ) if include_index: @@ -735,6 +839,77 @@ def test_contains(interval_index, x, closed, expected, how, include_index): assert (result == expected_result).all() +@pytest.mark.parametrize( + "interval_index", + [True, False], +) +@pytest.mark.parametrize( + "x, closed, expected", + [ + (0, "left", [[True], [False], [False]]), + (0, "right", [[False], [False], [False]]), + (0, "both", [[True], [False], [False]]), + (0, "neither", [[False], [False], [False]]), + (6, "left", [[False], [False], [False]]), + (6, "right", [[False], [False], [True]]), + (6, "neither", [[False], [False], [False]]), + (6, "both", [[False], [False], [True]]), + ( + [2, 4, 5], + "left", + [[True, False, False], [True, True, False], [False, True, True]], + ), + ( + [2, 4, 5], + "right", + [[True, True, False], [False, True, True], [False, True, True]], + ), + ( + [2, 4, 5], + "both", + [[True, True, False], [True, True, True], [False, True, True]], + ), + ( + [2, 4, 5], + "neither", + [[True, False, False], [False, True, False], [False, True, True]], + ), + ], +) +@pytest.mark.parametrize( + "method", + ["supplied", "accessor", "package"], +) +@pytest.mark.parametrize( + "include_index", + [True, False], +) +@pytest.mark.parametrize("result_type", ["points", "intervals"]) +@pytest.mark.parametrize("how", ["any", "all"]) +def test_contains_non_cartesian( + interval_index, x, closed, expected, method, include_index, result_type, how +): + ia = make_ia2(interval_index, closed) + result = perform_op( + ia, + x, + include_index, + method=method, + function=piso_intervalarray.contains, + result=result_type, + how=how, + ) + axis = 0 if result_type == "points" else 1 + logical_func = np.all if how == "all" else np.any + expected_result = logical_func(np.array(expected), axis=axis) + if include_index: + index = np.array(x, ndmin=1) if result_type == "points" else ia + expected_result = pd.Series(expected_result, index=index) + pd.testing.assert_series_equal(result, expected_result, check_dtype=False) + else: + assert (result == expected_result).all() + + @pytest.mark.parametrize( "interval_index", [True, False], @@ -756,14 +931,14 @@ def test_contains(interval_index, x, closed, expected, how, include_index): ["left", "right", "both", "neither"], ) @pytest.mark.parametrize( - "how", + "method", ["supplied", "accessor", "package"], ) @pytest.mark.parametrize( "date_type", ["timestamp", "numpy", "datetime", "timedelta", None], ) -def test_split(interval_index, x, expected_tuples, closed, how, date_type): +def test_split(interval_index, x, expected_tuples, closed, method, date_type): ia = make_ia4(interval_index, closed) ia = map_to_dates(ia, date_type) @@ -774,7 +949,7 @@ def test_split(interval_index, x, expected_tuples, closed, how, date_type): result = perform_op( ia, x, - how=how, + method=method, function=piso_intervalarray.split, ) assert_interval_array_equal(