diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index b0c56e0..edea244 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -10,15 +10,15 @@ jobs: strategy: matrix: platform: [ubuntu-latest, macos-latest, windows-latest] - python-version: ['3.7', '3.8', '3.10', '3.11'] + python-version: ['3.8', '3.10', '3.11', '3.12'] defaults: run: shell: bash steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - name: Upgrade pip @@ -44,19 +44,19 @@ jobs: run: poetry run flake8 ./piso - name: Test with pytest run: | - poetry run pytest ./tests --junitxml=junit/test-results-${{ matrix.python-version }}.xml --cov=piso --cov-report=xml + poetry run pytest ./tests --junitxml=junit/test-results-${{ matrix.platform }}-${{ matrix.python-version }}.xml --cov=piso --cov-report=xml codecov - name: Upload pytest test results - uses: actions/upload-artifact@v2 + uses: actions/upload-artifact@v4 with: - name: pytest-results-${{ matrix.python-version }} - path: junit/test-results-${{ matrix.python-version }}.xml + name: pytest-results-${{ matrix.platform }}-${{ matrix.python-version }} + path: junit/test-results-${{ matrix.platform }}-${{ matrix.python-version }}.xml # Use always() to always run this step to publish test results when there are test failures if: ${{ always() }} - name: Upload coverage to Codecov - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 with: token: ${{ secrets.CODECOV_TOKEN }} - fail_ci_if_error: true + fail_ci_if_error: false \ No newline at end of file diff --git a/.github/workflows/pre-commit.yml b/.github/workflows/pre-commit.yml index 5f27942..b40d34b 100644 --- a/.github/workflows/pre-commit.yml +++ b/.github/workflows/pre-commit.yml @@ -11,6 +11,6 @@ jobs: group: ${{ github.ref }}-pre-commit cancel-in-progress: ${{github.event_name == 'pull_request'}} steps: - - uses: actions/checkout@v3 - - uses: actions/setup-python@v3 + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 - uses: pre-commit/action@v3.0.0 diff --git a/docs/general_requirements.txt b/docs/general_requirements.txt index 5f10dec..380fc90 100644 --- a/docs/general_requirements.txt +++ b/docs/general_requirements.txt @@ -1,5 +1,5 @@ ipykernel -sphinx +sphinx >= 5 nbsphinx sphinx-panels staircase >= 2.1 @@ -9,3 +9,4 @@ Pygments pydata-sphinx-theme toml numpydoc +matplotlib >= 3.7 diff --git a/docs/release_notes/index.rst b/docs/release_notes/index.rst index bf8cd19..1ca1215 100644 --- a/docs/release_notes/index.rst +++ b/docs/release_notes/index.rst @@ -5,6 +5,12 @@ Release notes ======================== +**v1.1.0 2024-06-25** + +- support for Python 3.12 added +- support for Python 3.7 removed + + **v1.0.0 2023-07-05** - Compatibility with pandas 2 diff --git a/docs/requirements.txt b/docs/requirements.txt index 5f10dec..a6cb247 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,11 +1,86 @@ -ipykernel -sphinx -nbsphinx -sphinx-panels -staircase >= 2.1 -pandas -numpy -Pygments -pydata-sphinx-theme -toml -numpydoc +accessible-pygments==0.0.5 +alabaster==0.7.16 +appnope==0.1.4 +asttokens==2.4.1 +attrs==23.2.0 +Babel==2.15.0 +beautifulsoup4==4.12.3 +bleach==6.1.0 +certifi==2024.6.2 +charset-normalizer==3.3.2 +comm==0.2.2 +contourpy==1.2.1 +cycler==0.12.1 +debugpy==1.8.1 +decorator==5.1.1 +defusedxml==0.7.1 +docutils==0.21.2 +executing==2.0.1 +fastjsonschema==2.20.0 +fonttools==4.53.0 +idna==3.7 +imagesize==1.4.1 +ipykernel==6.29.4 +ipython==8.25.0 +jedi==0.19.1 +Jinja2==3.1.4 +jsonschema==4.22.0 +jsonschema-specifications==2023.12.1 +jupyter_client==8.6.2 +jupyter_core==5.7.2 +jupyterlab_pygments==0.3.0 +kiwisolver==1.4.5 +MarkupSafe==2.1.5 +matplotlib==3.9.0 +matplotlib-inline==0.1.7 +mistune==3.0.2 +nbclient==0.10.0 +nbconvert==7.16.4 +nbformat==5.10.4 +nbsphinx==0.9.4 +nest-asyncio==1.6.0 +numpy==1.26.4 +numpydoc==1.7.0 +packaging==24.1 +pandas==2.2.2 +pandocfilters==1.5.1 +parso==0.8.4 +pexpect==4.9.0 +pillow==10.3.0 +platformdirs==4.2.2 +prompt_toolkit==3.0.47 +psutil==6.0.0 +ptyprocess==0.7.0 +pure-eval==0.2.2 +pydata-sphinx-theme==0.15.3 +Pygments==2.18.0 +pyparsing==3.1.2 +python-dateutil==2.9.0.post0 +pytz==2024.1 +pyzmq==26.0.3 +referencing==0.35.1 +requests==2.32.3 +rpds-py==0.18.1 +six==1.16.0 +snowballstemmer==2.2.0 +soupsieve==2.5 +Sphinx==7.3.7 +sphinx-panels==0.4.1 +sphinxcontrib-applehelp==1.0.8 +sphinxcontrib-devhelp==1.0.6 +sphinxcontrib-htmlhelp==2.0.5 +sphinxcontrib-jsmath==1.0.1 +sphinxcontrib-qthelp==1.0.7 +sphinxcontrib-serializinghtml==1.1.10 +stack-data==0.6.3 +staircase==2.6.0 +tabulate==0.9.0 +tinycss2==1.3.0 +toml==0.10.2 +tornado==6.4.1 +traitlets==5.14.3 +typing_extensions==4.12.2 +tzdata==2024.1 +urllib3==2.2.2 +wcwidth==0.2.13 +webencodings==0.5.1 \ No newline at end of file diff --git a/docs/user_guide/case_studies/calendar.rst b/docs/user_guide/case_studies/calendar.rst index b0b82d0..ac7da8a 100644 --- a/docs/user_guide/case_studies/calendar.rst +++ b/docs/user_guide/case_studies/calendar.rst @@ -57,6 +57,7 @@ and where the values are instances of :class:`pandas.arrays.IntervalArray` and h df["end"], closed="left", ), + include_groups=False, ) ) meetings diff --git a/docs/user_guide/case_studies/football.rst b/docs/user_guide/case_studies/football.rst index 0ef0813..0782f30 100644 --- a/docs/user_guide/case_studies/football.rst +++ b/docs/user_guide/case_studies/football.rst @@ -99,7 +99,8 @@ Using this dataframe we will now provide answers for miscellaneous questions. I .. ipython:: python CvsL.groupby("half").apply( - lambda df: df.query("score_liverpool - score_chelsea == 1").index.length.sum() + lambda df: df.query("score_liverpool - score_chelsea == 1").index.length.sum(), + include_groups=False, ) **What was the score at the 80 minute mark?** diff --git a/docs/user_guide/case_studies/maintenance.rst b/docs/user_guide/case_studies/maintenance.rst index 276acd6..87645d1 100644 --- a/docs/user_guide/case_studies/maintenance.rst +++ b/docs/user_guide/case_studies/maintenance.rst @@ -54,6 +54,7 @@ where the values are instances of :class:`pandas.arrays.IntervalArray`. df["end"], closed="left", ), + include_groups=False, ) ) maintenance diff --git a/piso/docstrings/accessor.py b/piso/docstrings/accessor.py index f4b5816..c820ca3 100644 --- a/piso/docstrings/accessor.py +++ b/piso/docstrings/accessor.py @@ -955,7 +955,7 @@ def join_params(list_of_param_strings): or equal to the threshold. Overlapping intervals will be merged, regardless of threshold value. The intervals are contained in the object the accessor belongs to. They may be left-closed, -right-closed, both, or neither, and contain overlapping intervals. +or right-closed, and contain overlapping intervals. Parameters ---------- diff --git a/piso/docstrings/intervalarray.py b/piso/docstrings/intervalarray.py index 7bcb3f0..23430c0 100644 --- a/piso/docstrings/intervalarray.py +++ b/piso/docstrings/intervalarray.py @@ -899,8 +899,8 @@ def join_params(list_of_param_strings): Given a set of intervals, and a threshold, merges intervals which are separated by a gap less than or equal to the threshold. Overlapping intervals will be merged, regardless of threshold value. -The intervals are contained in the object the accessor belongs to. They may be left-closed, -right-closed, both, or neither, and contain overlapping intervals. +The intervals are contained in the object the accessor belongs to. They may be left-closed or +right-closed, and contain overlapping intervals. Parameters ---------- diff --git a/piso/ndframe.py b/piso/ndframe.py index d792363..3eac518 100644 --- a/piso/ndframe.py +++ b/piso/ndframe.py @@ -57,7 +57,7 @@ def _get_indexers(*dfs): def _handle_overlapping_columns(frames, suffixes): - col_counts = pd.Series.value_counts(list(itertools.chain.from_iterable(frames))) + col_counts = pd.Series(list(itertools.chain.from_iterable(frames))).value_counts() common_columns = col_counts[col_counts > 1].index if len(common_columns) > 0: if len(suffixes) != len(frames): diff --git a/poetry.lock b/poetry.lock index 9d3129a..41469d0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "alabaster" version = "0.7.13" description = "A configurable sidebar-enabled Sphinx theme" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -14,65 +13,61 @@ files = [ [[package]] name = "anyio" -version = "3.7.0" +version = "4.4.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" -category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "anyio-3.7.0-py3-none-any.whl", hash = "sha256:eddca883c4175f14df8aedce21054bfca3adb70ffe76a9f607aef9d7fa2ea7f0"}, - {file = "anyio-3.7.0.tar.gz", hash = "sha256:275d9973793619a5374e1c89a4f4ad3f4b0a5510a2b5b939444bee8f4c4d37ce"}, + {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"}, + {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"}, ] [package.dependencies] -exceptiongroup = {version = "*", markers = "python_version < \"3.11\""} +exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""} idna = ">=2.8" sniffio = ">=1.1" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} +typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} [package.extras] -doc = ["Sphinx (>=6.1.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme", "sphinxcontrib-jquery"] -test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (<0.22)"] +doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] +trio = ["trio (>=0.23)"] [[package]] name = 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hash = "sha256:d384164d944190a7dd7ef22c6aa3ff197da12962bd04b17f64d4e93d934dba5b"}, - {file = "argon2_cffi-21.3.0-py3-none-any.whl", hash = "sha256:8c976986f2c5c0e5000919e6de187906cfd81fb1c72bf9d88c01177e77da7f80"}, + {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"}, + {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"}, ] [package.dependencies] argon2-cffi-bindings = "*" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["cogapp", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "pre-commit", "pytest", "sphinx", "sphinx-notfound-page", "tomli"] -docs = ["furo", "sphinx", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] +dev = ["argon2-cffi[tests,typing]", "tox (>4)"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-copybutton", "sphinx-notfound-page"] +tests = ["hypothesis", "pytest"] +typing = ["mypy"] [[package]] name = "argon2-cffi-bindings" version = "21.2.0" description = "Low-level CFFI bindings for Argon2" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -107,58 +102,96 @@ dev = ["cogapp", "pre-commit", "pytest", "wheel"] tests = ["pytest"] [[package]] -name = "atomicwrites" -version = "1.4.1" -description = "Atomic file writes." -category = "dev" +name = "arrow" +version = "1.3.0" +description = "Better dates & times for Python" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.8" files = [ - {file = "atomicwrites-1.4.1.tar.gz", hash = "sha256:81b2c9071a49367a7f770170e5eec8cb66567cfbbc8c73d20ce5ca4a8d71cf11"}, + {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"}, + {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"}, ] 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'Programming Language :: Python :: 3.7', 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', + 'Programming Language :: Python :: 3.12', 'Topic :: Scientific/Engineering', ] [tool.poetry.dependencies] -python = "^3.7" +python = "^3.8" staircase = "^2.1.0" [[tool.poetry.dependencies.pandas]] -python = ">=3.7,<3.10" +python = ">=3.8,<3.10" version = "^1" [[tool.poetry.dependencies.pandas]] @@ -54,8 +54,8 @@ python = "^3.10" version = ">=1.3.4,<3" [[tool.poetry.dependencies.numpy]] -python = ">=3.7,<3.10" -version = "^1.15" +python = ">=3.8,<3.10" +version = "^1.17" [[tool.poetry.dependencies.numpy]] python = "^3.10" @@ -64,7 +64,7 @@ version = "^1.21.2" [tool.poetry.dev-dependencies] ipykernel = "^6" -pytest = "^6" +pytest = "^8" pytest-cov = "*" sphinx = "*" nbsphinx = ">=0.8.5" diff --git a/setup.cfg b/setup.cfg index 874d264..29585f9 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,4 +1,4 @@ [flake8] max-line-length = 88 -ignore = E203, E231, E402, E501, F401, W503 +ignore = E203, E231, E402, E501, F401, W503, W604 exclude = docs \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tox.ini b/tox.ini index e15a863..5077139 100644 --- a/tox.ini +++ b/tox.ini @@ -1,19 +1,23 @@ [tox] isolated_build=true envlist = - py{37}-pandas{10,11}-numpy{115,116,117,118,119,120,121} - py{37}-pandas{12}-numpy{116,117,118,119,120,121} - py{37}-pandas{13}-numpy{117,118,119,120,121} - py{38}-pandas{10,11,12,13}-numpy{117,118,119,120,121,122,123} - py{38}-pandas{14}-numpy{118,119,120,121,122,123} - py{38}-pandas{15}-numpy{120,121,122,123} - py{39}-pandas{11,12,13,14}-numpy{119,120,121,122,123} - py{39}-pandas{15}-numpy{120,121,122,123} - py{310}-pandas{13,14,15}-numpy{121,122,123} - + py{38}-pandas{11,12,13}-numpy{118,119,120,121,122,123,124} + py{38}-pandas{14}-numpy{118,119,120,121,122,123,124} + py{38}-pandas{15}-numpy{120,121,122,123,124} + py{39}-pandas{11,12,13}-numpy{120,121,122,123,124,125,126} + py{39}-pandas{14}-numpy{120,121,122,123,124,125,126} + py{39}-pandas{15}-numpy{120,121,122,123,124,125,126} + py{310}-pandas{13,14,15}-numpy{122,123,124,125,126} + py{310}-pandas{20}-numpy{122,123,124,125,126} + py{310}-pandas{21,22}-numpy{122,123,124,125,126} + py{311}-pandas{20}-numpy{124,125,126} + py{311}-pandas{21,22}-numpy{124,125,126} + py{312}-pandas{21,22}-numpy{126} +skipdist = true [testenv] deps = + staircase pytest pytest-cov pandas10: pandas>=1.0,<1.1 @@ -22,8 +26,9 @@ deps = pandas13: pandas>=1.3,<1.4 pandas14: pandas>=1.4,<1.5 pandas15: pandas>=1.5,<1.6 - numpy115: numpy>=1.15,<1.16 - numpy116: numpy>=1.16,<1.17 + pandas20: pandas>=2.0,<2.1 + pandas21: pandas>=2.1,<2.2 + pandas22: pandas>=2.2,<2.3 numpy117: numpy>=1.17,<1.18 numpy118: numpy>=1.18,<1.19 numpy119: numpy>=1.19,<1.20 @@ -31,6 +36,9 @@ deps = numpy121: numpy>=1.21,<1.22 numpy122: numpy>=1.22,<1.23 numpy123: numpy>=1.23,<1.24 -skip_install = false + numpy124: numpy>=1.24,<1.25 + numpy125: numpy>=1.25,<1.26 + numpy126: numpy>=1.26,<1.27 +skip_install = true commands = - pytest tests/ + pytest tests/ \ No newline at end of file