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Merge pull request #326 from standardhealth/dev6
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| /.vscode | ||
| .DS_Store | ||
| .DS_Store |
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| @@ -0,0 +1,2 @@ | ||
| { | ||
| } |
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58 changes: 58 additions & 0 deletions
58
spec/Examples_mCODE_dstu2/mCODECancerStageGroupExample02.json
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| { | ||
| "resourceType": "Observation", | ||
| "id": "mCODECancerStageGroupExample02", | ||
| "meta": { | ||
| "profile": [ | ||
| "http://hl7.org/fhir/us/mcode/StructureDefinition/onco-core-CancerStageGroup" | ||
| ] | ||
| }, | ||
| "text": { | ||
| "status": "generated", | ||
| "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>*** mCODE Example: Cancer Stage Group ***</b></p><p><b>Name</b>: Eve M. Anyperson </p><p><b>MRN</b>: m456 </p><p><b>Date</b>: 05/01/19 </p><p><b>Cancer staging system</b>: AJCC Version 8</p><p><b>Stage group</b>: IIIC</p></div>" | ||
| }, | ||
| "status": "final", | ||
| "category": | ||
| { | ||
| "coding": [ | ||
| { | ||
| "system": "http://hl7.org/fhir/observation-category", | ||
| "code": "laboratory" | ||
| } | ||
| ] | ||
| }, | ||
| "method": | ||
| { | ||
| "text": "AJCC Version 8" | ||
| }, | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "21908-9", | ||
| "display": "Stage group.clinical Cancer" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/mCODEPatientExample02", | ||
| "display": "Eve M. Anyperson" | ||
| }, | ||
| "effectiveDateTime": "2019-05-01", | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://cancerstaging.org", | ||
| "code": "3A", | ||
| "display": "IIIA" | ||
| } | ||
| ] | ||
| }, | ||
| "extension": [ | ||
| { | ||
| "url": "http://hl7.org/fhir/us/mcode/StructureDefinition/onco-core-PrimaryCancerCondition-extension", | ||
| "valueReference": { | ||
| "reference": "Condition/mCODEPrimaryCancerConditionExample02" | ||
| } | ||
| } | ||
| ] | ||
| } |
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125 changes: 125 additions & 0 deletions
125
spec/Examples_mCODE_dstu2/mCODEGeneticVariantFoundExample02.json
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|---|---|---|
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| { | ||
| "resourceType": "Observation", | ||
| "id": "mCODEGeneticVariantFoundExample02", | ||
| "meta": { | ||
| "profile": [ | ||
| "http://hl7.org/fhir/us/mcode/StructureDefinition/onco-core-GeneticVariantFound" | ||
| ] | ||
| }, | ||
| "text": { | ||
| "status": "generated", | ||
| "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n\t\t\t<p>\n\t\t\t\t<b>*** mCODE Example: Genetic Variant Assessment ***</b>\n\t\t\t</p>\n\t\t\t<p>\n\t\t\t\t<b>Patient identifier</b>: m456</p>\n\t\t\t<p><b>Name</b>: Eve M. Anyperson </p>\n\t\t\t<p>\n\t\t\t\t<b>Test date</b>: June 5, 2019</p>\n\t\t\t<p>\n\t\t\t\t<b>Genomic source class [Type]</b>: Somatic</p>\n\t\t\t<p>\n\t\t\t\t<b>Variant HGVS name</b>: NM_001289938.1:c.836G>C</p>\n\t\t\t<p><b>Variant common name</b>: G279A</p>\n\t\t\t</div>" | ||
| }, | ||
| "status": "final", | ||
| "category" : { | ||
| "coding" : [ | ||
| { | ||
| "system" : "http://hl7.org/fhir/observation-category", | ||
| "code" : "laboratory", | ||
| "userSelected": false | ||
| } | ||
| ], | ||
| "text" : "Laboratory" | ||
| }, | ||
| "method": | ||
| { | ||
| "coding": [ | ||
| { | ||
| "system": "http://ncit.nci.nih.gov", | ||
| "code": "C101293", | ||
| "display": "Next Generation Sequencing" | ||
| } | ||
| ] | ||
| }, | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "69548-6", | ||
| "display": "Genetic variant assessment" | ||
| } | ||
| ] | ||
| }, | ||
| "subject": { | ||
| "reference": "Patient/mCODEPatientExample02", | ||
| "display": "Eve M. Anyperson" | ||
| }, | ||
| "effectiveDateTime": "2019-06-05", | ||
| "component": [ | ||
| { | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "48002-0", | ||
| "display": "Genomic source class [Type]" | ||
| } | ||
| ] | ||
| }, | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "LA6684-0", | ||
| "display": "Somatic" | ||
| } | ||
| ], | ||
| "text": "Somatic" | ||
| } | ||
| }, | ||
| { | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "48003-8", | ||
| "display": "DNA sequence variation identifier [Identifier]" | ||
| } | ||
| ] | ||
| }, | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://www.ncbi.nlm.nih.gov/clinvar/", | ||
| "code": "376205", | ||
| "display": "NM_001005862.2(ERBB2):c.836G>C (p.Gly279Ala)" | ||
| } | ||
| ], | ||
| "text": "NM_001005862.2(ERBB2):c.836G>C (p.Gly279Ala)" | ||
| } | ||
| }, | ||
| { | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "82154-6", | ||
| "display": "Genomic structural variant name" | ||
| } | ||
| ] | ||
| }, | ||
| "valueCodeableConcept": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://varnomen.hgvs.org", | ||
| "code": "NM_001289938.1:c.836G>C", | ||
| "display": "NM_001289938.1:c.836G>C" | ||
| } | ||
| ], | ||
| "text": "G279A" | ||
| } | ||
| }, | ||
| { | ||
| "code": { | ||
| "coding": [ | ||
| { | ||
| "system": "http://loinc.org", | ||
| "code": "47998-0", | ||
| "display": "DNA sequence variation display name [Text] Narrative" | ||
| } | ||
| ] | ||
| }, | ||
| "valueString": "G279A" | ||
| } | ||
| ] | ||
| } |
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