Merge branch 'master' of github.com:statisticalbiotechnology/triqler

statisticalbiotechnology · Jan 7, 2025 · 58848b1 · 58848b1
2 parents 98d7032 + d9b37c6
commit 58848b1
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diff --git a/example/iPRG2016_ref.proteins.1vs2.tsv b/example/iPRG2016_ref.proteins.1vs2.tsv
diff --git a/example/iPRG2016_ref.proteins.1vs3.tsv b/example/iPRG2016_ref.proteins.1vs3.tsv
diff --git a/example/iPRG2016_ref.proteins.2vs3.tsv b/example/iPRG2016_ref.proteins.2vs3.tsv
diff --git a/example/iPRG2016_ref.tsv.pqr.tsv b/example/iPRG2016_ref.tsv.pqr.tsv
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -25,8 +25,8 @@ plot_hyperparameter_fits = 'triqler.distribution.plot_hyperparameter_fits:main'
 plot_posteriors = 'triqler.distribution.plot_posteriors:main'
 
 [tool.poetry.dependencies]
-python = ">=3.8,<3.12"
-numpy = "^1.23.3"
+python = ">=3.9,<3.13"
+numpy = "^2.0.0"
 scipy = "^1.9.1"
 threadpoolctl = "^3.1.0"
 pandas = ">=1.4.0"

diff --git a/run_test.sh b/run_test.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+set -e # Stop on the first error
+
 export OMP_NUM_THREADS=4
 # to replace the reference results execute the following line:
 #   rename -f 's/iPRG2016./iPRG2016_ref./g' example/iPRG2016.p*; mv example/iPRG2016.tsv.pqr.tsv example/iPRG2016_ref.tsv.pqr.tsv