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Database extraction failed #42

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valentynbez opened this issue Nov 7, 2023 · 2 comments
Open

Database extraction failed #42

valentynbez opened this issue Nov 7, 2023 · 2 comments
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help wanted Extra attention is needed

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@valentynbez
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valentynbez commented Nov 7, 2023

Probably related to #39

I used the command from the issue to subset a database:

f"{foldcomp_binary} decompress -t 64 --db --id-list {txt_representatives} {full_af_db} {output_foldcomp}"

Now when I run check or extract --fasta commands on the output FoldComp database I receive errors:

[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A1Y5IHP5-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A2D4CD26-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A356R7W7-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A7C3A4K1-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A7V3HAS1-F1-model_v4 failed.
[Error] File is not a valid fcz file
[Error] processing db entry AF-A0A502RJ01-F1-model_v4 failed.
...

Foldcomp version: dev (cloned today and built locally)
OS: Red Hat 7.9

@khb7840
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khb7840 commented Nov 8, 2023

Thank you for notification. I'll check this.

@khb7840
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khb7840 commented Dec 29, 2023

I'm sorry for making confusion. The solution of this is provided in #45.

@khb7840 khb7840 added the help wanted Extra attention is needed label Dec 29, 2023
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