diff --git a/alon_yeast_transcription/config_gof_simulation_yeast_transcription_reciprocity.txt b/alon_yeast_transcription/config_gof_simulation_yeast_transcription_reciprocity.txt new file mode 100755 index 0000000..f085e1e --- /dev/null +++ b/alon_yeast_transcription/config_gof_simulation_yeast_transcription_reciprocity.txt @@ -0,0 +1,27 @@ +# Generated by: /home/stivala/EstimNetDirected/scripts/estimnetdirectedEstimation2simulationConfig.sh config_yeast_transcription.txt estimation_yeast_transcription.out stats_gof_simulation_yeast_transcription_reciprocity.txt simulation_gof_yeast_transcription_reciprocity.txt +# At: Mon Aug 3 08:40:57 CEST 2020 +# On: Linux icsmaster01 3.10.0-514.6.2.el7.x86_64 #1 SMP Thu Feb 23 03:04:39 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux +# arclistFile = yeast_transcription_arclist.txt +# observedStatsFilePrefix = +numNodes = 688 +useTNTsampler = True # use the tie-no-tie sampler +sampleSize = 100 #number of network samples to take from simulation +interval = 100000 # interval (iterations) between samples +burnin = 1000000 # number of iterations to throw away before first sample +outputSimulatedNetworks = True +#binattrFile = +#catattrFile = +# Filename of file to write statistics to +statsFile = stats_gof_simulation_yeast_transcription_reciprocity.txt +# Prefix of simulated networks in Pajek .net file format +simNetFilePrefix = simulation_gof_yeast_transcription_reciprocity +structParams = { +AltInStars = 0.3358185, +AltKTrianglesT = 2.390454, +AltOutStars = 2.636652, +AltTwoPathsT = -0.1486661, +Arc = -10.09292, +Reciprocity = -10.80019, +Sink = 3.002736, +Source = 1.949498} + diff --git a/alon_yeast_transcription/config_yeast_transcription.txt b/alon_yeast_transcription/config_yeast_transcription.txt index e6e5a0e..2a0a8d5 100755 --- a/alon_yeast_transcription/config_yeast_transcription.txt +++ b/alon_yeast_transcription/config_yeast_transcription.txt @@ -93,9 +93,8 @@ simNetFilePrefix = sim_yeast_transcription # Structural parameters # -structParams = { AltInStars, AltOutStars, Sink, Source, - AltTwoPathsTD, - AltKTrianglesT, AltKTrianglesC} +structParams = { Reciprocity, AltInStars, AltOutStars, Sink, Source, + AltTwoPathsT, AltKTrianglesT } # # Attribute parameters