v2.0

Include R and Python scripts for correct (exact) counting of geodesic cycles by determining if input cycles (use chordless cycles from CYPATH) are geodesic. Also include all scripts (including R and slurm scripts) used for generating models, simulating networks, counting geodesic cycles, etc., and not just those in the scripts directory. Also include data sets now (both the Patricia data I hand-coded from published diagrams, and publicly available data used).