ci: adds formal comparison with CrossMap as part of the CI
#18
Workflow file for this run
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| name: Compare | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| crossmap: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Update Rust | |
| run: rustup update stable && rustup default stable | |
| - name: Install CrossMap | |
| run: pip install CrossMap | |
| - uses: Swatinem/rust-cache@v2 | |
| with: | |
| workspaces: . | |
| - run: | | |
| mkdir -p chainfiles | |
| cargo run --release --features=binaries -- -d chainfiles hg19ToHg38 -vvv | exit 0 | |
| ls chainfiles/reference |