Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

0.3.0 - 01-03-2025

Added

Added a new bin/compare-crossmap.rs that compares the performance of chainfile with CrossMap (https://crossmap.sourceforge.net).

Revise

The inner data structures were replaced with facilities provided by the omics family of crates (#4).
In a subsequent pull request, the omics crates were updated to v0.2.0. This was a much more robust system for representing coordinates (#5).

0.2.1 — 09-09-2023

Fixes

Checks strand equality before performing liftover in chainfile::liftover::Machine.

0.2.0 — 04-24-2023

Added

Adds liftover capabilities and related examples.

0.1.0 — 03-30-2023

Added

Includes first version of the crate, including correct chain file parsing and iteration over alignment data sections within the chain file.