Merge pull request #84 from snlab-ch/develop

Solves differences between C++ and R estimation engines

.github/workflows/R-CMD-check.yml

@@ -29,7 +29,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/pkgdown.yml

@@ -15,7 +15,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/prchecks.yml

@@ -24,12 +24,12 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/setup-r@master
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
-      - uses: r-lib/actions/setup-pandoc@master
+      - uses: r-lib/actions/setup-pandoc@v2
 
       - name: Query dependencies
         run: |

.github/workflows/pushrelease.yml

@@ -24,7 +24,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -95,7 +95,7 @@ jobs:
           RELEASE_BRANCHES: main
 
       - name: Checkout two
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
 
       - name: Create Release
         id: create_release

DESCRIPTION

@@ -2,8 +2,8 @@ Encoding: UTF-8
 Package: goldfish
 Type: Package
 Title: Statistical Network Models for Dynamic Network Data
-Version: 1.6.4
-Date: 2022-08-23
+Version: 1.6.5
+Date: 2023-06-20
 Authors@R: c(person("James", "Hollway", role = c("cre", "aut", "dtc"), 
                     email = "james.hollway@graduateinstitute.ch",
                     comment = c("IHEID", ORCID = "0000-0002-8361-9647")),
@@ -39,6 +39,7 @@ Imports:
     stats,
     generics,
     ggplot2,
+    rlang,
     tibble
 LinkingTo:
     Rcpp,
@@ -57,7 +58,7 @@ Suggests:
     lmtest
 VignetteBuilder: knitr 
 LazyData: true
-RoxygenNote: 7.2.1
+RoxygenNote: 7.2.3
 Roxygen: list(markdown = TRUE)
 NeedsCompilation: yes
 Config/testthat/edition: 3

NAMESPACE

@@ -30,50 +30,18 @@ export(glance)
 export(linkEvents)
 export(tidy)
 importFrom(Rcpp,sourceCpp)
-importFrom(changepoint,cpt.mean)
-importFrom(changepoint,cpt.var)
 importFrom(generics,glance)
 importFrom(generics,tidy)
-importFrom(ggplot2,aes)
-importFrom(ggplot2,aes_string)
-importFrom(ggplot2,element_text)
-importFrom(ggplot2,geom_line)
-importFrom(ggplot2,geom_point)
-importFrom(ggplot2,geom_text)
-importFrom(ggplot2,geom_vline)
-importFrom(ggplot2,ggplot)
-importFrom(ggplot2,scale_x_continuous)
-importFrom(ggplot2,theme)
-importFrom(ggplot2,theme_minimal)
-importFrom(ggplot2,xlab)
-importFrom(ggplot2,ylab)
-importFrom(graphics,points)
-importFrom(methods,is)
-importFrom(stats,.vcov.aliased)
-importFrom(stats,AIC)
-importFrom(stats,BIC)
+importFrom(rlang,.data)
 importFrom(stats,IQR)
-importFrom(stats,aggregate)
 importFrom(stats,as.formula)
 importFrom(stats,coef)
-importFrom(stats,confint)
-importFrom(stats,end)
-importFrom(stats,filter)
 importFrom(stats,formula)
 importFrom(stats,median)
 importFrom(stats,na.exclude)
 importFrom(stats,na.omit)
-importFrom(stats,pnorm)
-importFrom(stats,printCoefmat)
-importFrom(stats,qnorm)
 importFrom(stats,sd)
-importFrom(stats,time)
-importFrom(tibble,as_tibble)
-importFrom(utils,getTxtProgressBar)
 importFrom(utils,head)
-importFrom(utils,object.size)
 importFrom(utils,packageDescription)
 importFrom(utils,packageVersion)
-importFrom(utils,setTxtProgressBar)
-importFrom(utils,txtProgressBar)
 useDynLib(goldfish)

NEWS.md

@@ -1,3 +1,14 @@
+# goldfish 1.6.5
+
+* Solves `startTime` and `endTime` bug on `DyNAM` and `REM` models
+  preprocessing.
+* Clean unnecessary functions imports.
+* Solves `aes_string()` deprecation.
+* Solves issue on `C++` engine on DyNAM-rate.
+* Enforcing an 80-character line length on C++ code.
+* Comply with code style.
+* Changes that reduce execution time in the R estimation engine.
+
 # goldfish 1.6.4
 
 * Change mentioning of `.GlobalEnv` and drop `goldfishObjects()`.