Merge pull request #286 from snlab-ch/develop

v1.2.0

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: migraph
 Title: Multimodal Network Analysis and More
-Version: 1.1.9
-Date: 2023-12-13
+Version: 1.2.0
+Date: 2023-12-17
 Description: A set of tools for analysing multimodal networks.
    It includes functions for measuring 
    centrality, centralization, cohesion, closure, constraint and diversity,

NAMESPACE

@@ -90,11 +90,6 @@ export(guides)
 export(is.igraph)
 export(is.network)
 export(is.tbl_graph)
-export(is_acyclic)
-export(is_aperiodic)
-export(is_connected)
-export(is_eulerian)
-export(is_perfect_matching)
 export(k_elbow)
 export(k_silhouette)
 export(k_strict)
@@ -121,6 +116,7 @@ export(network_eigenvector)
 export(network_equivalency)
 export(network_factions)
 export(network_harmonic)
+export(network_hazard)
 export(network_heterophily)
 export(network_homophily)
 export(network_immunity)
@@ -175,11 +171,15 @@ export(node_infomap)
 export(node_is_core)
 export(node_is_cutpoint)
 export(node_is_exposed)
+export(node_is_fold)
+export(node_is_infected)
 export(node_is_isolate)
+export(node_is_latent)
 export(node_is_max)
 export(node_is_mentor)
 export(node_is_min)
 export(node_is_random)
+export(node_is_recovered)
 export(node_kernighanlin)
 export(node_leading_eigen)
 export(node_leiden)
@@ -278,10 +278,8 @@ importFrom(igraph,edge_density)
 importFrom(igraph,fit_power_law)
 importFrom(igraph,graph.neighborhood)
 importFrom(igraph,graph_from_incidence_matrix)
-importFrom(igraph,is.connected)
 importFrom(igraph,is.igraph)
 importFrom(igraph,is_bipartite)
-importFrom(igraph,is_dag)
 importFrom(igraph,knn)
 importFrom(igraph,mean_distance)
 importFrom(igraph,power_centrality)
@@ -293,9 +291,6 @@ importFrom(igraph,which_loop)
 importFrom(igraph,which_multiple)
 importFrom(igraph,which_mutual)
 importFrom(manynet,as_igraph)
-importFrom(manynet,is_directed)
-importFrom(manynet,is_twomode)
-importFrom(manynet,to_matching)
 importFrom(network,as.network)
 importFrom(network,is.network)
 importFrom(purrr,flatten)

NEWS.md

@@ -1,3 +1,37 @@
+# migraph 1.2.0
+
+2023-12-17
+
+## Marks
+
+- Added `node_is_infected()` to identify infected nodes at given time
+- Added `node_is_latent()` to identify infected nodes at given time
+- Added `node_is_recovered()` to identify infected nodes at given time
+- Added `node_is_fold()` for identifying nodes that are occupying structural folds
+- Dropped last `is_*()` functions from migraph to avoid unnecessary conflicts with manynet at startup
+- Improved 'mark_nodes' documentation
+
+## Measures
+
+- Added `network_hazard()` for calculating the hazard rate for each time point of a diff_model object
+- `node_adoption_time()` now works with incomplete diffusions
+  - Fixed bug with named vectors
+- `node_exposure()` now uses `node_is_infected()` for more flexibility
+- `node_thresholds()` now works with incomplete diffusions
+  - Adds exposure data where not provided
+
+## Members
+
+- `node_adopter()` now correctly identifies non-adopters
+
+## Models
+
+- `play_diffusion()` 
+  - Now records only the first exposure event until susceptible again
+  - Now uses `node_is_exposed()` and `node_exposure()` internally
+  - Made play_diffusion() code easier to understand and debug
+  - Added some tests for `play_diffusion()`
+
 # migraph 1.1.9
 
 2023-12-13