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DESCRIPTION
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DESCRIPTION
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Package: batchtma
Title: Batch Effect Adjustments
Version: 0.1.7
Authors@R:
c(person(given = "Konrad",
family = "Stopsack",
role = c("aut", "cre"),
email = "stopsack@post.harvard.edu",
comment = c(ORCID = "0000-0002-0722-1311")),
person(given = "Travis",
family = "Gerke",
role = c("aut"),
email = "gerket@mskcc.org",
comment = c(ORCID = "0000-0002-9500-8907")))
Description: Different adjustment methods for batch effects in biomarker data,
such as from tissue microarrays. Some methods attempt to retain differences
between batches that may be due to between-batch differences in "biological"
factors that influence biomarker values.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews:
Imports:
broom (>= 0.7.0),
dplyr (>= 1.0.0),
geepack,
ggplot2,
limma,
nnet,
purrr (>= 0.3.0),
quantreg,
rlang (>= 0.4.0),
stringr,
tibble,
tidyr (>= 1.1.0),
magrittr
Suggests:
knitr,
rmarkdown
VignetteBuilder: knitr
URL: https://stopsack.github.io/batchtma, https://github.com/stopsack/batchtma