Merge pull request #850 from sul-dlss/nuke_sciencewire

Nuke sciencewire

app/controllers/publications_controller.rb

@@ -68,11 +68,6 @@ def sourcelookup
         all_matching_records += wos_matches
         logger.debug(" -- WOS (#{wos_matches.length})")
       end
-      if Settings.SCIENCEWIRE.enabled
-        sw_matches = ScienceWireClient.new.query_sciencewire_for_publication(nil, nil, nil, params[:title], params[:year], params.fetch(:max_rows, 20).to_i)
-        all_matching_records += sw_matches
-        logger.debug(" -- sciencewire (#{sw_matches.length})")
-      end
       # lastly, always check for manual
       results = Publication.joins(:user_submitted_source_records)
                            .where(UserSubmittedSourceRecord.arel_table[:title].matches("%#{params[:title]}%"))

app/jobs/author_harvest_job.rb

@@ -9,7 +9,6 @@ def perform(cap_profile_id, harvest_alternate_names: false)
     author = Author.find_by(cap_profile_id: cap_profile_id)
     author ||= Author.fetch_from_cap_and_create(cap_profile_id)
     raise "Could not find or fetch author: #{cap_profile_id}" unless author.is_a?(Author)
-    sciencewire(author, harvest_alternate_names)
     web_of_science(author, harvest_alternate_names)
   rescue => e
     msg = "AuthorHarvestJob.perform(#{cap_profile_id}, harvest_alternate_names: #{harvest_alternate_names})"
@@ -29,17 +28,6 @@ def log_pubs(author)
       logger.info "Number of publications #{pubs.count}"
     end
 
-    # @param [Author] author
-    # @param [Boolean] harvest_alternate_names
-    # @return [void]
-    def sciencewire(author, harvest_alternate_names)
-      return unless Settings.SCIENCEWIRE.enabled
-      harvester = ScienceWireHarvester.new
-      harvester.use_author_identities = harvest_alternate_names
-      harvester.harvest_pubs_for_author_ids author.id
-      log_pubs(author)
-    end
-
     # @param [Author] author
     # @param [Boolean] _harvest_alternate_names
     # @return [void]

app/models/sciencewire_source_record.rb

@@ -35,14 +35,7 @@ def publication_xml
   # is_active, source_data and the source_fingerprint fields.
   # @return [Boolean] the return value from update_attributes!
   def sciencewire_update
-    sw_record_doc = ScienceWireClient.new.get_sw_xml_source_for_sw_id(sciencewire_id)
-    sw_pub = ScienceWirePublication.new sw_record_doc
-    attrs = {}
-    attrs[:pmid] = sw_pub.pmid unless sw_pub.pmid.blank?
-    attrs[:is_active] = !sw_pub.obsolete?
-    attrs[:source_data] = sw_pub.to_xml
-    attrs[:source_fingerprint] = Digest::SHA2.hexdigest(sw_record_doc)
-    update_attributes! attrs
+    raise 'ScienceWire has been decommissioned!'
   end
 
   ##
@@ -75,69 +68,15 @@ def self.get_pub_by_sciencewire_id(sciencewire_id)
   end
 
   def self.get_sciencewire_hash_for_sw_id(sciencewire_id)
-    sciencewire_source_record = get_sciencewire_source_record_for_sw_id(sciencewire_id)
+    sciencewire_source_record = find_by(sciencewire_id: sciencewire_id)
     sciencewire_source_record.source_as_hash unless sciencewire_source_record.nil?
   end
 
   def self.get_sciencewire_hash_for_pmid(pmid)
-    sciencewire_source_record = get_sciencewire_source_record_for_pmid(pmid)
+    sciencewire_source_record = find_by(pmid: pmid)
     sciencewire_source_record.source_as_hash unless sciencewire_source_record.nil?
   end
 
-  def self.get_sciencewire_source_record_for_sw_id(sw_id)
-    find_by(sciencewire_id: sw_id) || get_sciencewire_source_record_from_sciencewire_by_sw_id(sw_id)
-  end
-
-  def self.get_sciencewire_source_record_for_pmid(pmid)
-    find_by(pmid: pmid) || get_sciencewire_source_record_from_sciencewire(pmid)
-  end
-
-  def self.get_sciencewire_source_record_from_sciencewire(pmid)
-    get_and_store_sw_source_records([pmid])
-    find_by(pmid: pmid)
-  end
-
-  def self.get_sciencewire_source_record_from_sciencewire_by_sw_id(sciencewire_id)
-    get_and_store_sw_source_record_for_sw_id(sciencewire_id)
-    find_by(sciencewire_id: sciencewire_id)
-  end
-
-  def self.get_and_store_sw_source_record_for_sw_id(sciencewire_id)
-    sw_record_doc = ScienceWireClient.new.get_sw_xml_source_for_sw_id(sciencewire_id)
-    pmid = extract_pmid(sw_record_doc)
-    where(sciencewire_id: sciencewire_id).first_or_create(
-      source_data: sw_record_doc.to_xml,
-      is_active: true,
-      pmid: pmid,
-      source_fingerprint: Digest::SHA2.hexdigest(sw_record_doc))
-  end
-  private_class_method :get_and_store_sw_source_record_for_sw_id
-
-  # get and store sciencewire source records for pmid list
-  def self.get_and_store_sw_source_records(pmids)
-    sw_records_doc = ScienceWireClient.new.pull_records_from_sciencewire_for_pmids(pmids)
-    count = 0
-    source_records = []
-    sw_records_doc.xpath('//PublicationItem').each do |sw_record_doc|
-      pmid = extract_pmid(sw_record_doc)
-      sciencewire_id = extract_swid(sw_record_doc)
-      begin
-        count += 1
-        pmids.delete(pmid)
-        source_records << SciencewireSourceRecord.new(
-          sciencewire_id: sciencewire_id,
-          source_data: sw_record_doc.to_xml,
-          is_active: true,
-          pmid: pmid,
-          source_fingerprint: Digest::SHA2.hexdigest(sw_record_doc))
-      rescue => e
-        NotificationManager.error(e, "Cannot create SciencewireSourceRecord: sciencewire_id: #{sciencewire_id}, pmid: #{pmid}", self)
-      end
-    end
-    import source_records
-  end
-  private_class_method :get_and_store_sw_source_records
-
   def self.save_sw_source_record(sciencewire_id, pmid, incoming_sw_xml_as_string)
     existing_sw_source_record = find_by(
       sciencewire_id: sciencewire_id)

config/initializers/okcomputer.rb

@@ -36,7 +36,6 @@ def check
   Cap::Client,
   PubmedClient
 ]
-clients << ScienceWireClient if Settings.SCIENCEWIRE.enabled
 if Settings.WOS.enabled
   clients << WebOfScience
   clients << Clarivate::LinksClient

config/settings.yml

@@ -36,11 +36,10 @@ PUBMED:
 
 ## Sciencewire Auth Config
 SCIENCEWIRE:
-  enabled: true
+  enabled: false
   LOG: log/sciencewire.log
   BASE_URI: https://sciencewirerest.discoverylogic.com
   HOST: stg.sciencewirerest.discoverylogic.com
-  LICENSE_ID: some-license-id
   RECOMMENDATION_PATH: /PublicationCatalog/MatchedPublicationItemIdsForAuthor?format=xml
   TMPDIR: /tmp
   ARTICLE_BASE_URI: https://ws.isiknowledge.com/cps/openurl/service?url_ver=Z39.88-2004&rft_id=info:ut/