From c54e6c0a03d9cf67d8c577c6b9a82520eb2c59bc Mon Sep 17 00:00:00 2001
From: ctbus <ctbushman@gmail.com>
Date: Tue, 17 Oct 2023 11:55:39 -0400
Subject: [PATCH] Separate envs

---
 envs/extras_env.linux-64.pin.txt    | 312 ----------------------------
 envs/extras_env.yml                 |   7 -
 envs/spades_env.linux-64.pin.txt    |  34 +++
 envs/spades_env.yml                 |   5 +
 envs/virsorter_env.linux-64.pin.txt | 145 +++++++++++++
 envs/virsorter_env.yml              |   6 +
 6 files changed, 190 insertions(+), 319 deletions(-)
 delete mode 100644 envs/extras_env.linux-64.pin.txt
 delete mode 100755 envs/extras_env.yml
 create mode 100644 envs/spades_env.linux-64.pin.txt
 create mode 100755 envs/spades_env.yml
 create mode 100644 envs/virsorter_env.linux-64.pin.txt
 create mode 100755 envs/virsorter_env.yml

diff --git a/envs/extras_env.linux-64.pin.txt b/envs/extras_env.linux-64.pin.txt
deleted file mode 100644
index 5052652..0000000
--- a/envs/extras_env.linux-64.pin.txt
+++ /dev/null
@@ -1,312 +0,0 @@
-# This file may be used to create an environment using:
-# $ conda create --name <env> --file <this file>
-# platform: linux-64
-@EXPLICIT
-https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/conda-forge/noarch/_sysroot_linux-64_curr_repodata_hack-3-h69a702a_13.conda#f6ce7955b53ae1ca83144adb3be9c600
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
-https://conda.anaconda.org/bioconda/linux-64/hmmer-3.1b2-3.tar.bz2#efa4143ff1ec060168561edd98fff483
-https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
-https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-3.10.0-h4a8ded7_13.tar.bz2#523bc836a954faf0cca94831971bb85a
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
-https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
-https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.17-h4a8ded7_13.tar.bz2#57e5a5191ffe999b9f4dfdbcd0ddcba4
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
-https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
-https://conda.anaconda.org/bioconda/linux-64/c-ares-1.11.0-h470a237_1.tar.bz2#cd621a5a302e401429e1ba2157082bb6
-https://conda.anaconda.org/bioconda/linux-64/clustalw-2.1-h4ac6f70_9.tar.bz2#919194f6f7d733afff4d3c6f54e08d07
-https://conda.anaconda.org/conda-forge/linux-64/expat-2.2.10-h9c3ff4c_0.tar.bz2#c924bc4e7ae49118f6c97bd4357fed0e
-https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8
-https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2#14947d8770185e5153fdd04d4673ed37
-https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.1-h0b41bf4_3.conda#96f3b11872ef6fad973eac856cd2624f
-https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h58526e2_1001.tar.bz2#8c54672728e8ec6aa6db90cf2806d220
-https://conda.anaconda.org/conda-forge/linux-64/icu-67.1-he1b5a44_0.tar.bz2#7ced6a5e5c94726af797d2b5a2b09228
-https://conda.anaconda.org/conda-forge/linux-64/jpeg-9e-h0b41bf4_3.conda#c7a069243e1fbe9a556ed2ec030e6407
-https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2#6f8720dff19e17ce5d48cfe7f3d2f0a3
-https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-7.2.0-h69d50b8_2.tar.bz2#9962126180acc1a4fec0c6aabe7c2459
-https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2#b62b52da46c39ee2bc3c162ac7f1804d
-https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-hd590300_1.conda#854e3e1623b39777140f199c5f9ab952
-https://conda.anaconda.org/conda-forge/linux-64/libtool-2.4.7-h27087fc_0.conda#f204c8ba400ec475452737094fb81d52
-https://conda.anaconda.org/conda-forge/linux-64/libunistring-0.9.10-h7f98852_0.tar.bz2#7245a044b4a1980ed83196176b78b73a
-https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
-https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.2.0-h7f98852_2.tar.bz2#fb63a035a3b552c88a30d84b89ebf4c4
-https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
-https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-8.0.1-hc9558a2_0.tar.bz2#67590caab043d6d7ffc371f9cced7848
-https://conda.anaconda.org/bioconda/linux-64/metagene_annotator-1.0-h516909a_3.tar.bz2#31488c031513e6bc4ba0c5bcfb49992e
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-https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-hcb278e6_0.conda#681105bccc2a3f7f1a837d47d39c9179
-https://conda.anaconda.org/conda-forge/linux-64/openssl-1.1.1w-hd590300_0.conda#301e70057a3bd399640bb16bbdf87995
-https://conda.anaconda.org/conda-forge/linux-64/ossuuid-1.6.2-hf484d3e_1000.tar.bz2#0ca24876ead80a9290d3936aea5fefb1
-https://conda.anaconda.org/bioconda/linux-64/paml-4.10.6-h031d066_2.tar.bz2#2adac5d4627dacbf16552a5e677a2a0b
-https://conda.anaconda.org/conda-forge/linux-64/pcre-8.45-h9c3ff4c_0.tar.bz2#c05d1820a6d34ff07aaaab7a9b7eddaa
-https://conda.anaconda.org/conda-forge/linux-64/perl-5.26.2-h36c2ea0_1008.tar.bz2#880aa2aacfafa2bc69f7d42168fcee7d
-https://conda.anaconda.org/conda-forge/linux-64/pixman-0.42.2-h59595ed_0.conda#700edd63ccd5fc66b70b1c028cea9a68
-https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036
-https://conda.anaconda.org/bioconda/linux-64/tidyp-1.04-hec16e2b_4.tar.bz2#d5b09ebf6f220ce63d2d1316ad58b596
-https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2#4b230e8381279d76131116660f5a241a
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.0.10-h7f98852_0.tar.bz2#d6b0b50b49eccfe0be0373be628be0f3
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hd590300_0.conda#2c80dc38fface310c9bd81b17037fee5
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.3-h7f98852_0.tar.bz2#be93aabceefa2fac576e971aef407908
-https://conda.anaconda.org/conda-forge/linux-64/xorg-renderproto-0.11.1-h7f98852_1002.tar.bz2#06feff3d2634e3097ce2fe681474b534
-https://conda.anaconda.org/conda-forge/linux-64/xorg-xextproto-7.3.0-h0b41bf4_1003.conda#bce9f945da8ad2ae9b1d7165a64d0f87
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-https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
-https://conda.anaconda.org/bioconda/linux-64/spades-3.15.5-h95f258a_1.tar.bz2#62ab35497479905dce6860525262104f
-https://conda.anaconda.org/conda-forge/noarch/wheel-0.41.2-pyhd8ed1ab_0.conda#1ccd092478b3e0ee10d7a891adbf8a4f
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxpm-3.5.13-h7f98852_0.tar.bz2#2bbe4b67a97c9d18a807598941fc3b4c
-https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-2.7.2-ha5b49bf_1.tar.bz2#71644db5e3e9a0bd6e04439d06e5190b
-https://conda.anaconda.org/bioconda/linux-64/perl-file-listing-6.04-pl526_1.tar.bz2#2a2f44c2b29a326f46abb72aea331845
-https://conda.anaconda.org/bioconda/linux-64/perl-gd-2.71-pl526he860b03_0.tar.bz2#727bd472da433835978063c22b3f31c4
-https://conda.anaconda.org/bioconda/linux-64/perl-html-tableextract-2.13-pl526_2.tar.bz2#ce74a864c8e3af76921cb8645372de61
-https://conda.anaconda.org/bioconda/linux-64/perl-package-stash-0.38-pl526hf484d3e_1.tar.bz2#cfceef3c9c95da229cccb715ddd11c18
-https://conda.anaconda.org/bioconda/linux-64/perl-sub-exporter-0.987-pl526_2.tar.bz2#5c47be06a5776fa6f3b6fb4e799bc5a1
-https://conda.anaconda.org/bioconda/linux-64/perl-svg-graph-0.02-pl526_3.tar.bz2#1463029642c6a4fdfda96965698088f1
-https://conda.anaconda.org/bioconda/linux-64/perl-uri-1.76-pl526_0.tar.bz2#30afcde2552ea47cdb5420e5319f66ad
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-libxml-2.0132-pl526h7ec2d77_1.tar.bz2#a9501a6119c0b10f7d20e6d3c15f9714
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-sax-expat-0.51-pl526_3.tar.bz2#dd0420867f8efc417116567491cccffa
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-twig-3.52-pl526_2.tar.bz2#3c3238fa183ea240a2a5b08a615dfd79
-https://conda.anaconda.org/conda-forge/noarch/pip-23.2.1-pyhd8ed1ab_0.conda#e2783aa3f9235225eec92f9081c5b801
-https://conda.anaconda.org/bioconda/linux-64/t_coffee-11.0.8-py37hea885bf_8.tar.bz2#eee20ab46d13f264a8957fed239d39b7
-https://conda.anaconda.org/bioconda/linux-64/ncbi-vdb-3.0.8-hdbdd923_0.tar.bz2#3b58cf2b702f96d812c67466456fe251
-https://conda.anaconda.org/conda-forge/linux-64/pango-1.42.4-h69149e4_5.tar.bz2#9e325ab71e743c57955e73172d1db615
-https://conda.anaconda.org/bioconda/linux-64/perl-class-load-0.25-pl526_0.tar.bz2#03c73103dc5e4f7daabd6bb0931193b6
-https://conda.anaconda.org/bioconda/linux-64/perl-devel-overloadinfo-0.005-pl526_0.tar.bz2#c3f198e3bc81f5f1af1aedff4dbd9167
-https://conda.anaconda.org/bioconda/linux-64/perl-http-message-6.18-pl526_0.tar.bz2#96eb00c7acca58e160fb34a41ea546c5
-https://conda.anaconda.org/bioconda/linux-64/perl-image-info-1.38-pl526_1.tar.bz2#c317aa28d2ba5a73abb9a5d91ee7c988
-https://conda.anaconda.org/bioconda/noarch/perl-net-http-6.19-pl526_0.tar.bz2#160f8e846ea37406d973acbf83b5a26b
-https://conda.anaconda.org/bioconda/linux-64/perl-package-deprecationmanager-0.17-pl526_0.tar.bz2#b2f09a023ab3afe9f71a86776ee05e3b
-https://conda.anaconda.org/bioconda/linux-64/perl-www-robotrules-6.02-pl526_3.tar.bz2#8b06331804b3b94eb99b3c1c4b7a4d72
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-libxslt-1.94-pl526_1.tar.bz2#d9e8421667819f405cba79dab4723bab
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-simple-2.25-pl526_1.tar.bz2#f410354a825d186da9f843f6ff9cd15e
-https://conda.anaconda.org/bioconda/linux-64/blast-2.14.1-pl5321h6f7f691_0.tar.bz2#717b2ae9b971e769e00b984e37fe8947
-https://conda.anaconda.org/conda-forge/linux-64/graphviz-2.42.3-h0511662_0.tar.bz2#948953f31e65b438a1e520a741ccd9b4
-https://conda.anaconda.org/bioconda/linux-64/perl-class-load-xs-0.10-pl526h6bb024c_2.tar.bz2#94e570466f327fdb7a83ed8e12523cfd
-https://conda.anaconda.org/bioconda/linux-64/perl-data-stag-0.14-pl526_1.tar.bz2#3a50f48ef514466c9288b3151df08d8a
-https://conda.anaconda.org/bioconda/linux-64/perl-http-cookies-6.04-pl526_0.tar.bz2#24c2429d0ac0467c11a34cae14f366ce
-https://conda.anaconda.org/bioconda/linux-64/perl-http-daemon-6.01-pl526_1.tar.bz2#b6540672ea97f10b1088ece63b799177
-https://conda.anaconda.org/bioconda/linux-64/perl-http-negotiate-6.01-pl526_3.tar.bz2#3be31b3d87352fdd54246212bae3ede9
-https://conda.anaconda.org/bioconda/linux-64/perl-template-toolkit-2.26-pl526_1.tar.bz2#fa89ace236f54f558e7569b276338968
-https://conda.anaconda.org/bioconda/linux-64/mcl-14.137-pl5262h779adbc_6.tar.bz2#a75c4d8dea45814d3b80a50fbfa5adca
-https://conda.anaconda.org/bioconda/noarch/perl-bio-phylo-0.58-pl5262hdfd78af_3.tar.bz2#5c1d7067424e815dbb5642dd2bd3eaf5
-https://conda.anaconda.org/bioconda/linux-64/perl-graphviz-2.24-pl526h734ff71_0.tar.bz2#926d75742d73904e0f9b0eba0e2a11ec
-https://conda.anaconda.org/bioconda/noarch/perl-libwww-perl-6.39-pl526_0.tar.bz2#54f96d7a0ea63cc4505f8cc653c831ee
-https://conda.anaconda.org/bioconda/linux-64/perl-moose-2.2011-pl526hf484d3e_1.tar.bz2#3cbc780a48b996083b19cece0e7cdb2f
-https://conda.anaconda.org/bioconda/linux-64/perl-lwp-protocol-https-6.07-pl526_4.tar.bz2#890387d167b855b7ba31853e8a470030
-https://conda.anaconda.org/bioconda/linux-64/perl-moo-2.003004-pl526_0.tar.bz2#95008534c8c436981eb84793459fd532
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-dom-1.46-pl526_0.tar.bz2#0be82b3d737f4412d9a11481f5e74e8b
-https://conda.anaconda.org/bioconda/linux-64/perl-array-compare-3.0.1-pl526_1.tar.bz2#707a482cecc408d3574ac06c1d681211
-https://conda.anaconda.org/bioconda/linux-64/perl-parallel-forkmanager-2.02-pl526_0.tar.bz2#6f3243b751726938412045706c626727
-https://conda.anaconda.org/bioconda/linux-64/perl-soap-lite-1.19-pl526_1.tar.bz2#5eff39fd516c8c8fbe1fe911150f38b2
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-dom-xpath-0.14-pl526_1.tar.bz2#c9bdd4aa6de4c1745ab959923beccb05
-https://conda.anaconda.org/bioconda/noarch/perl-bioperl-core-1.007002-pl5262hdfd78af_3.tar.bz2#1bef0cfcd0294e17aeea44bfc397f610
-https://conda.anaconda.org/bioconda/noarch/perl-bio-asn1-entrezgene-1.73-pl5262hdfd78af_2.tar.bz2#ae612dabb9d0b59ac2287f6eefa12b40
-https://conda.anaconda.org/bioconda/noarch/perl-bio-coordinate-1.007001-pl5262hdfd78af_2.tar.bz2#e1bf5881c8ac82e19c8d24861a1f9d19
-https://conda.anaconda.org/bioconda/noarch/perl-bio-featureio-1.6.905-pl5262hdfd78af_3.tar.bz2#1d30df60376fa0c79768d9f85313f207
-https://conda.anaconda.org/bioconda/linux-64/perl-bio-samtools-1.43-pl526h1341992_1.tar.bz2#477fdf7fd3dcfb7dc9b755f48d7c9175
-https://conda.anaconda.org/bioconda/noarch/perl-bioperl-run-1.007002-pl5262hdfd78af_5.tar.bz2#bf6e302bd62eaf7a95f53136d9e71234
-https://conda.anaconda.org/bioconda/noarch/perl-bio-tools-phylo-paml-1.7.3-pl5262hdfd78af_2.tar.bz2#c3a180cae8b54afc4fc7e0b130fde0df
-https://conda.anaconda.org/bioconda/noarch/perl-bio-tools-run-alignment-clustalw-1.7.4-pl5262hdfd78af_2.tar.bz2#85f4d7898fc7911ff5f71c24c082075e
-https://conda.anaconda.org/bioconda/noarch/perl-bio-tools-run-alignment-tcoffee-1.7.4-pl5262hdfd78af_3.tar.bz2#3a929bb2e5d30052660674d5c0f1d862
-https://conda.anaconda.org/bioconda/noarch/perl-bioperl-1.7.2-pl526_11.tar.bz2#2fe21b69efb39401d28f27f398f7d26e
-https://conda.anaconda.org/bioconda/linux-64/virsorter-1.0.6-pl526h516909a_1.tar.bz2#4c4f3ffc58991caae672878a5d18e62c
diff --git a/envs/extras_env.yml b/envs/extras_env.yml
deleted file mode 100755
index eb85284..0000000
--- a/envs/extras_env.yml
+++ /dev/null
@@ -1,7 +0,0 @@
-channels:
-  - bioconda
-dependencies:
-  - spades
-  - virsorter
-  #- python =12.0.0
-name: extras_env
\ No newline at end of file
diff --git a/envs/spades_env.linux-64.pin.txt b/envs/spades_env.linux-64.pin.txt
new file mode 100644
index 0000000..79dc603
--- /dev/null
+++ b/envs/spades_env.linux-64.pin.txt
@@ -0,0 +1,34 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/noarch/_sysroot_linux-64_curr_repodata_hack-3-h69a702a_13.conda#f6ce7955b53ae1ca83144adb3be9c600
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda#939e3e74d8be4dac89ce83b20de2492a
+https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-3.10.0-h4a8ded7_13.tar.bz2#523bc836a954faf0cca94831971bb85a
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.17-h4a8ded7_13.tar.bz2#57e5a5191ffe999b9f4dfdbcd0ddcba4
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
+https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
+https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-8.0.1-hc9558a2_0.tar.bz2#67590caab043d6d7ffc371f9cced7848
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-hcb278e6_0.conda#681105bccc2a3f7f1a837d47d39c9179
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.3-hd590300_0.conda#7bb88ce04c8deb9f7d763ae04a1da72f
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.43.2-h2797004_0.conda#4b441a1ee22397d5a27dc1126b849edd
+https://conda.anaconda.org/conda-forge/linux-64/openmp-8.0.1-0.tar.bz2#b35241079152e5cc891c99368395b2c6
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-h2797004_0.conda#513336054f884f95d9fd925748f41ef3
+https://conda.anaconda.org/conda-forge/linux-64/python-3.12.0-hab00c5b_0_cpython.conda#7f97faab5bebcc2580f4f299285323da
+https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
+https://conda.anaconda.org/bioconda/linux-64/spades-3.15.5-h95f258a_1.tar.bz2#62ab35497479905dce6860525262104f
+https://conda.anaconda.org/conda-forge/noarch/wheel-0.41.2-pyhd8ed1ab_0.conda#1ccd092478b3e0ee10d7a891adbf8a4f
+https://conda.anaconda.org/conda-forge/noarch/pip-23.3-pyhd8ed1ab_0.conda#a06f102f59c8e3bb8b3e46e71c384709
diff --git a/envs/spades_env.yml b/envs/spades_env.yml
new file mode 100755
index 0000000..10976cf
--- /dev/null
+++ b/envs/spades_env.yml
@@ -0,0 +1,5 @@
+channels:
+  - bioconda
+dependencies:
+  - spades
+name: spades_env
\ No newline at end of file
diff --git a/envs/virsorter_env.linux-64.pin.txt b/envs/virsorter_env.linux-64.pin.txt
new file mode 100644
index 0000000..6ad0f8c
--- /dev/null
+++ b/envs/virsorter_env.linux-64.pin.txt
@@ -0,0 +1,145 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda#9172c297304f2a20134fc56c97fbe229
+https://conda.anaconda.org/conda-forge/noarch/pybind11-abi-4-hd8ed1ab_3.tar.bz2#878f923dd6acc8aeb47a75da6c4098be
+https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-4_cp310.conda#26322ec5d7712c3ded99dd656142b8ce
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda#939e3e74d8be4dac89ce83b20de2492a
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_2.conda#e2042154faafe61969556f28bade94b9
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda#c28003b0be0494f9a7664389146716ff
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.20.1-hd590300_0.conda#6642e4faa4804be3a0e7edfefbd16595
+https://conda.anaconda.org/conda-forge/linux-64/fmt-10.1.1-h00ab1b0_0.conda#5c875bdc09118cd3fc2edd39842e4c35
+https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2#14947d8770185e5153fdd04d4673ed37
+https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff
+https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
+https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2#6f8720dff19e17ce5d48cfe7f3d2f0a3
+https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_2.conda#78fdab09d9138851dde2b5fe2a11019e
+https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2#b62b52da46c39ee2bc3c162ac7f1804d
+https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
+https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
+https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0
+https://conda.anaconda.org/conda-forge/linux-64/lzo-2.10-h516909a_1000.tar.bz2#bb14fcb13341b81d5eb386423b9d2bac
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diff --git a/envs/virsorter_env.yml b/envs/virsorter_env.yml
new file mode 100755
index 0000000..4ac9631
--- /dev/null
+++ b/envs/virsorter_env.yml
@@ -0,0 +1,6 @@
+channels:
+  - conda-forge
+  - bioconda
+dependencies:
+  - virsorter =2
+name: virsorter_env
\ No newline at end of file