Script not shell

sunbeam-labs · Aug 22, 2023 · f6e69cb · f6e69cb
1 parent 656eb3f
commit f6e69cb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/sbx_virus_id.smk b/sbx_virus_id.smk
@@ -222,7 +222,7 @@ rule filter_virus_coverage:
         idx=VIRUS_FP / "alignments" / "{sample}.sorted.idxstats.tsv",
     output:
         VIRUS_FP / "final_{sample}_contigs.fasta",
-    shell:
+    script:
         "scripts/filter_virus_coverage.py"