From f6e69cb449e758a9e4312f8db9ff5912d5d4ae2a Mon Sep 17 00:00:00 2001
From: ctbus <ctbushman@gmail.com>
Date: Tue, 22 Aug 2023 10:52:09 -0400
Subject: [PATCH] Script not shell

---
 sbx_virus_id.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sbx_virus_id.smk b/sbx_virus_id.smk
index fbe4e81..581d931 100755
--- a/sbx_virus_id.smk
+++ b/sbx_virus_id.smk
@@ -222,7 +222,7 @@ rule filter_virus_coverage:
         idx=VIRUS_FP / "alignments" / "{sample}.sorted.idxstats.tsv",
     output:
         VIRUS_FP / "final_{sample}_contigs.fasta",
-    shell:
+    script:
         "scripts/filter_virus_coverage.py"