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download release asset instead of latest run #56

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merged 6 commits into from
Sep 26, 2024
Merged

download release asset instead of latest run #56

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f212814
download release asset instead of latest run
t0mdavid-m Sep 26, 2024
9bb9ee4
reenable docker image ci
t0mdavid-m Sep 26, 2024
f94e27c
remove print statements
t0mdavid-m Sep 26, 2024
faa3d9e
copy pages.toml
t0mdavid-m Sep 26, 2024
09d9b30
conditionally download windows version
t0mdavid-m Sep 26, 2024
249ee60
update example files
t0mdavid-m Sep 26, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/build-docker-images.yml
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Expand Up @@ -2,9 +2,9 @@ name: Docker Image CI

on:
push:
branches: [ "main", "TaggerViewerDeploy"]
branches: [ "main", "develop", "deploy"]
pull_request:
branches: [ "main", "TaggerViewerDeploy"]
branches: [ "main", "develop", "deploy"]

jobs:

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31 changes: 16 additions & 15 deletions Dockerfile
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Expand Up @@ -13,7 +13,7 @@ FROM node:21 AS js-build

# JS Component
ARG VUE_REPO=https://github.com/t0mdavid-m/openms-streamlit-vue-component.git
ARG VUE_BRANCH=TaggerViewer
ARG VUE_BRANCH=FVdeploy

ADD https://api.github.com/repos/t0mdavid-m/openms-streamlit-vue-component/git/refs/heads/$VUE_BRANCH version.json

Expand All @@ -28,7 +28,7 @@ WORKDIR /
COPY --from=js-build openms-streamlit-vue-component/dist /app/js-component/dist

ARG OPENMS_REPO=https://github.com/t0mdavid-m/OpenMS.git
ARG OPENMS_BRANCH=TaggerViewerDeployment
ARG OPENMS_BRANCH=FVdeploy
ARG PORT=8501
# GitHub token to download latest OpenMS executable for Windows from Github action artifact.
ARG GITHUB_TOKEN
Expand Down Expand Up @@ -56,13 +56,13 @@ RUN apt-get install -y --no-install-recommends --no-install-suggests libboost-da
RUN apt-get install -y --no-install-recommends --no-install-suggests qtbase5-dev libqt5svg5-dev libqt5opengl5-dev

# Install Github CLI
RUN (type -p wget >/dev/null || (sudo apt update && sudo apt-get install wget -y)) \
&& sudo mkdir -p -m 755 /etc/apt/keyrings \
&& wget -qO- https://cli.github.com/packages/githubcli-archive-keyring.gpg | sudo tee /etc/apt/keyrings/githubcli-archive-keyring.gpg > /dev/null \
&& sudo chmod go+r /etc/apt/keyrings/githubcli-archive-keyring.gpg \
&& echo "deb [arch=$(dpkg --print-architecture) signed-by=/etc/apt/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | sudo tee /etc/apt/sources.list.d/github-cli.list > /dev/null \
&& sudo apt update \
&& sudo apt install gh -y
RUN (type -p wget >/dev/null || (apt-get update && apt-get install wget -y)) \
&& mkdir -p -m 755 /etc/apt/keyrings \
&& wget -qO- https://cli.github.com/packages/githubcli-archive-keyring.gpg | tee /etc/apt/keyrings/githubcli-archive-keyring.gpg > /dev/null \
&& chmod go+r /etc/apt/keyrings/githubcli-archive-keyring.gpg \
&& echo "deb [arch=$(dpkg --print-architecture) signed-by=/etc/apt/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null \
&& apt-get update \
&& apt-get install gh -y

# Download and install mamba.
ENV PATH="/root/mambaforge/bin:${PATH}"
Expand Down Expand Up @@ -148,6 +148,7 @@ COPY app.py /app/app.py
COPY src/ /app/src
COPY assets/ /app/assets
COPY example-data/ /app/example-data
COPY .streamlit/ /app/.streamlit
COPY pages/ /app/pages
COPY clean-up-workspaces.py /app/clean-up-workspaces.py

Expand All @@ -162,12 +163,12 @@ RUN echo "mamba run --no-capture-output -n streamlit-env streamlit run app.py" >
RUN chmod +x /app/entrypoint.sh

# Download latest OpenMS App executable for Windows from Github actions workflow.
RUN gh release download --repo ${GITHUB_USER}/${GITHUB_REPO} --pattern "${ASSET_NAME}" --dir /app

# Extract the inner zip file and keep it
RUN unzip /app/${ASSET_NAME} "${ASSET_NAME}" -d /app/temp_unzip && \
mv /app/temp_unzip/${ASSET_NAME} /app/ && \
rm -rf /app/temp_unzip
RUN if [ -n "$GH_TOKEN" ]; then \
echo "GH_TOKEN is set, proceeding to download the release asset..."; \
gh release download --repo ${GITHUB_USER}/${GITHUB_REPO} --pattern "${ASSET_NAME}" --dir /app; \
else \
echo "GH_TOKEN is not set, skipping the release asset download."; \
fi

# Run app as container entrypoint.
EXPOSE $PORT
Expand Down
6 changes: 3 additions & 3 deletions example-data/flashtagger/example_spectrum_1_annotated.mzML
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20 changes: 10 additions & 10 deletions example-data/flashtagger/example_spectrum_1_deconv.mzML
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26 changes: 12 additions & 14 deletions example-data/flashtagger/example_spectrum_1_protein.tsv
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3,129 changes: 1,585 additions & 1,544 deletions example-data/flashtagger/example_spectrum_1_tagged.tsv
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6 changes: 3 additions & 3 deletions example-data/flashtagger/example_spectrum_2_annotated.mzML
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20 changes: 10 additions & 10 deletions example-data/flashtagger/example_spectrum_2_deconv.mzML
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13 changes: 7 additions & 6 deletions example-data/flashtagger/example_spectrum_2_protein.tsv
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@@ -1,6 +1,7 @@
ProteoformIndex Scan RetentionTime ProteinAccession ProteinDescription ProteoformMass DatabaseSequence ProteinSequence Proforma MatchedAminoAcidCount Coverage(%) StartPosition EndPosition TagCount TagIndices ModCount ModMass ModStart ModEnd Score ProteinLevelQvalue
0 1 4.41005058 sp|P60844|AQPZ_ECOLI Aquaporin Z OS=Escherichia coli (strain K12) OX=83333 GN=aqpZ PE=1 SV=1 -1.0 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD 18 7.79221 0 -1 18 17;101;203;205;215;725;750;794;861;898;910;936;937;963;979;1024;1046;1087 1 27.990893 18 20 69 -1.000000
1 1 4.41005058 sp|P0AAB8|USPD_ECOLI Universal stress protein D OS=Escherichia coli (strain K12) OX=83333 GN=uspD PE=2 SV=1 -1.0 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE 9 6.33803 -1 102 2 566;965 1 -256.148200 86 101 39 -1.000000
2 1 4.41005058 sp|P76406|YEGR_ECOLI Uncharacterized protein YegR OS=Escherichia coli (strain K12) OX=83333 GN=yegR PE=4 SV=2 -1.0 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDATH 7 6.66667 -1 72 2 961;1000 1 263.386031 11 44 31 -1.000000
3 1 4.41005058 sp|P77400|YBAT_ECOLI Inner membrane transport protein YbaT OS=Escherichia coli (strain K12) OX=83333 GN=ybaT PE=1 SV=1 -1.0 MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVARAFGAYAVQFLHEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHVGYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV GAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVARAFGAYAVQFLHEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHVGYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV 8 1.86047 23 -1 4 771;940;944;948 1 -266.003522 23 86 31 -1.000000
4 1 4.41005058 sp|P37746|RFBX_ECOLI Putative O-antigen transporter OS=Escherichia coli (strain K12) OX=83333 GN=rfbX PE=1 SV=4 -1.0 MNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGIFGFCQATMLYMIMFVEYGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIFLTSMTLLVPEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQSSANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRISSTLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDNAVIVLMIISPLPFLISLSNVYGIQVMLTHNYKKEFSKILIAAGLLSLLLIFPLTTLFKEIGAAITLLATECLVTSLMLMFVRNNKLLVC MNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGIFGFCQATMLYMIMFVEYGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIFLTSMTLLVPEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQSSANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRISSTLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDNAVIVLMIISPLPFLISLSNVYGIQVMLTHNYKKEFSKILIAAGLLSLLLIFPLTTLFKEIGAAITLLATECLVTSLMLMFVRNNKLLV 6 1.44578 -1 414 3 892;951;1054 1 -115.266938 389 413 21 -1.000000
ProteoformIndex Scan RetentionTime NumMass ProteinAccession ProteinDescription ProteoformMass DatabaseSequence ProteinSequence Proforma MatchingFragments Coverage(%) StartPosition EndPosition TagCount TagIndices ModCount ModMass ModID ModAccession ModStart ModEnd Score ProteoformLevelQvalue
0 1 4.41005058 231 AQPZ withCtermTag 2.469706365617677e04 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRDASGENLYFQ MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRDASGENLYFQ MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRDASGENLYFQ 69 28.75 1 240 9 17;101;203;205;215;725;750;898;937 0 385 -1.000000
1 1 4.41005058 231 sp|P60844|AQPZ_ECOLI Aquaporin Z OS=Escherichia coli (strain K12) OX=83333 GN=aqpZ PE=1 SV=1 -1.0 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLI MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLI 20 9.00901 1 222 3 725;898;937 0 119 -1.000000
2 1 4.41005058 231 sp|P38097|DGCE_ECOLI Probable diguanylate cyclase DgcE OS=Escherichia coli (strain K12) OX=83333 GN=dgcE PE=2 SV=2 -1.0 MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLAPLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAVVGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKGISISLPLSVAGLSSATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESVQKLRLAGCRIVLSQVGRDLQIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGEVIADAQPLDLLVNSSYFAIN LRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKGISISLPLSVAGLSSATL (LRLALGSAIVPPLLGGVLVVLLTPGD)[[-168.441]]DPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISL(KLWSCEGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKGISISLPLSVAGLSSATL)[[-168.441][-253.05]] 16 1.91617 125 959 4 771;940;948;960 2 -253.049670;-168.441273 ; ; 895;125 959;150 69 -1.000000
3 1 4.41005058 231 sp|P39369|YJHR_ECOLI Putative uncharacterized protein YjhR OS=Escherichia coli (strain K12) OX=83333 GN=yjhR PE=5 SV=1 -1.0 MGYLHIDGRGMKPNGGSRHNPLEAETIAAWLVAHKDDIERHYGEPLYKVVGVVTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFSPVYSKHEDGRFLDSNSTILNVAVSRAKDSFLVFGDMDLIEMQPAFSPRGLLAKYLFSSDNNALQFEFQKRQDLISAHTQISTLHGVEQHDEFLNKTLAGAQKKITIISPWLSWQKVEQTGFLASMALARSRGIDITVVTDKNCNIAHVDDDKRQEKQHLLNDAVEKLNKMGIATKLVNRVHSKIVIEDEELLCVGSFNWFSATREDKYQRYDTSLVYRGEGVKNEIKAIYGSLDQRQL DSNSTILNVAVSRAKDSFLVFGDMDLIEMQPAFSPRGLLAKYLFSSDNNALQFEFQKRQDLISAHTQISTLHGVEQHDEFLNKTLAGAQKKITIISPWLSWQKVEQTGFLASMALARSRGIDITVVTDKNCNIAHVDDDKRQEKQHLLNDAVEKLNKMGIATK (DSNSTILNVAVSRAKDSF)[[-189.164]]LVFGDMDLIEMQPAFSPRGLLAKYLFSSDNNALQFEFQKRQDLISAHTQISTLHGVEQHDEFLNKTLAGAQKKITII(SPWLSWQKVEQTGFLASMALARSRGIDITVVTDKNCNIAHVDDDKRQEKQHLLNDAVEKLNKMGIATK)[[-189.164][-231.971]] 11 6.74847 113 275 2 936;997 2 -231.971053;-189.163968 ; ; 208;113 275;130 44 -1.000000
4 1 4.41005058 231 sp|P76470|RHMT_ECOLI Inner membrane transport protein RhmT OS=Escherichia coli (strain K12) OX=83333 GN=rhmT PE=1 SV=2 -1.0 MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQIDTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWADTEAKFLIVRTLLRAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLSGALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQLASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFTASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVALCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH GLSGLLSPVMAIVALCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH (GLSGLLSPVMAIVALCVAAIGF)[[-211.202]]IAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH 8 7.33945 321 -1 3 771;940;948 1 -211.201869 321 342 42 -1.000000
5 1 4.41005058 231 sp|P0A786|PYRB_ECOLI Aspartate carbamoyltransferase catalytic subunit OS=Escherichia coli (strain K12) OX=83333 GN=pyrB PE=1 SV=2 -1.0 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSA MANPLYQKHIISI(NDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSA)[[-208.028]] 6 7.69231 -1 78 1 859 1 -208.027555 14 78 27 -1.000000
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