dirac-docker #4
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| name: dirac-docker | |
| on: | |
| # push: | |
| # branches: [ "dev" ] | |
| # pull_request: | |
| # branches: [ "dev" ] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: dirac | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Run the Docker image | |
| run: | | |
| PYTHONPATH=<FastSurferRoot> | |
| python build.py --device cuda --tag my_fastsurfer:cuda | |
| docker pull deepmi/fastsurfer | |
| docker run --gpus all -v /home/user/my_mri_data:/data \ | |
| -v /home/user/my_fastsurfer_analysis:/output \ | |
| -v /home/user/my_fs_license_dir:/fs_license \ | |
| --rm --user $(id -u):$(id -g) my_fastsurfer:cuda \ | |
| --fs_license /fs_license/license.txt \ | |
| --t1 /data/subjectX/t1-weighted.nii.gz \ | |
| --sid subjectX --sd /output \ | |
| --parallel |