update quicktest.yaml to pytest

taha-abdullah · Jun 27, 2024 · 7f49e76 · 7f49e76
1 parent 169dde6
commit 7f49e76
Showing 1 changed file with 7 additions and 26 deletions.
diff --git a/.github/workflows/quicktest.yaml b/.github/workflows/quicktest.yaml
@@ -84,29 +84,10 @@ jobs:
                       --sid subjectX --sd /output \
                       --parallel --3T
 
-  # Test file existence
-  test-file-existence:
-    runs-on: self-hosted
-    needs: run-fastsurfer
-    steps:
-    - name: Test File Existence
-      run: |
-        python3 test/quick_test/test_file_existence.py $RUNNER_FS_OUTPUT_FILES
-
-  # Test for errors in log files
-  test-error-messages:
-    runs-on: self-hosted
-    needs: [test-file-existence]
-    steps:
-    - name: Test Log Files For Error Messages
-      run: |
-        python3 test/quick_test/test_errors.py $RUNNER_FS_OUTPUT_LOGS
-
-  # Test seg_stats
-  test-seg-stats:
-    runs-on: self-hosted
-    needs: [test-error-messages]
-    steps:
-    - name: Test seg_stats
-      run: |
-        python3 test/quick_test/test_stats.py $RUNNER_FS_REF_STATS $RUNNER_FS_OUTPUT_STATS
+  # Run pytest
+  run-pytest:
+      runs-on: self-hosted
+      needs: run-fastsurfer
+      steps:
+      - name : Run pytest
+        run: pytest quicktest