cleaning up comments

.github/workflows/quicktest_runner.yaml

@@ -29,10 +29,9 @@ jobs:
     steps:
     - uses: actions/checkout@v2
 
+  # Check if fastsurfer output already exists, if so, skip run-fastsurfer and run pytest directly
   check-output:
     runs-on: self-hosted
-#    outputs:
-#      fastsurfer-output-exists: ${{ steps.check-fastsurfer-output.fastsurfer_output_exists }}
     needs: checkout
     steps:
     - name: Check FastSurfer Output Directory
@@ -123,20 +122,7 @@ jobs:
         python -m pip install --progress-bar off --upgrade pip \
         setuptools wheel
         python -m pip install --progress-bar off .[test]
-      # Check if FastSurfer output already exists
-#    - name: Check FastSurfer Output Directory
-#      run: |
-#        if [ -d "$RUNNER_FS_OUTPUT/subject1" ]; then
-#          echo "FastSurfer output directory for subject1 exists. Finishing job..."
-#          echo "HAS_FASTSURFER=false" >> $GITHUB_OUTPUT
-#          exit 0
-#        else
-#          echo "FastSurfer output directory for subject1 does not exist. Running FastSurfer..."
-#          echo "HAS_FASTSURFER=true" >> $GITHUB_OUTPUT
-#
-#        fi
-#      id: check-fastsurfer-output
-      # Run FastSurfer
+      # Run fastsurfer on list of subjects
     - name: Run FastSurfer
       run: |
         echo "Running FastSurfer..."
@@ -145,9 +131,8 @@ jobs:
         ./brun_fastsurfer.sh --subject_list $RUNNER_FS_MRI_DATA/subjects_list.txt \
                              --sd $RUNNER_FS_OUTPUT \
                              --parallel --threads 4 --3T --parallel_subjects surf
-#      if: steps.check-fastsurfer-output.outputs.HAS_FASTSURFER == 'true'
 
-  # Run pytest
+  # Test fastsurfer output
   run-pytest:
     runs-on: self-hosted
     if: ${{ always() && contains(join(needs.*.result, ','), 'success') }}