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A novel probabilistic approach to explicitly model overdispersion and sampling zeros in 16S rRNA sequencing data by considering the temporal correlation between nearby time points using Gaussian Processes

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tare/GPMicrobiome

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GPMicrobiome

Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing.

Installation

PyPI

$ pip install gpmicrobiome

GitHub

Install the version from the main branch as follows

$ pip install git+https://github.com/tare/GPMicrobiome.git

Usage

Please see this tutorial.

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A novel probabilistic approach to explicitly model overdispersion and sampling zeros in 16S rRNA sequencing data by considering the temporal correlation between nearby time points using Gaussian Processes

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