diff --git a/src/taxpasta/application/sample_handling_application.py b/src/taxpasta/application/sample_handling_application.py index 2ff8466..ef9f13f 100644 --- a/src/taxpasta/application/sample_handling_application.py +++ b/src/taxpasta/application/sample_handling_application.py @@ -51,7 +51,19 @@ class SampleHandlingApplication: - """Define the sample handling application.""" + """ + Define the sample handling application. + + Args: + profile_reader: A profile reader for a specific taxonomic profile format. + profile_standardiser: A profile standardisation service for a specific + taxonomic profile format. + taxonomy_service: A taxonomy service instance. It is assumed that all + profiles to be handled in the application are based on the given + taxonomy loaded in the service instance. + **kwargs: Passed on for inheritance. + + """ def __init__( self, @@ -61,19 +73,6 @@ def __init__( taxonomy_service: TaxonomyService | None = None, **kwargs: dict, ) -> None: - """ - Initialize the sample handling application. - - Args: - profile_reader: A profile reader for a specific taxonomic profile format. - profile_standardiser: A profile standardisation service for a specific - taxonomic profile format. - taxonomy_service: A taxonomy service instance. It is assumed that all - profiles to be handled in the application are based on the given - taxonomy loaded in the service instance. - **kwargs: Passed on for inheritance. - - """ super().__init__(**kwargs) self.reader = profile_reader self.standardiser = profile_standardiser