diff --git a/paper/paper.md b/paper/paper.md index 4bb1f69..9e4975d 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -71,7 +71,7 @@ modules or plugins needed of other 'dedicated' metagenomic profile formats. # Statement of need TAXPASTA is a Python package for standardising and aggregating metagenomic -profiles coming from a wide range of tools and databases. It was developed as +profiles coming from a wide range of tools and databases (\autoref{fig:summary}). It was developed as part of the nf-core/taxprofiler pipeline[^12] within the nf-core community [@ewels_nf-core_2020]. @@ -96,6 +96,8 @@ TAXPASTA is not the first tool to attempt standardising metagenomic profiles, but it is by far the most comprehensive in terms of supported profilers and output formats. +![A visual summary of TAXPASTA's capabilities. Supported profilers are listed on the left and output formats on the right. \label{fig:summary}](taxpasta_diagram_v0.4.png) + There exists an initiative to benchmark and compare profilers, as well as provide guidance on their fitness for purpose; the Critical Assessment of Metagenome Interpretation (CAMI) challenges [@sczyrba_critical_2017; diff --git a/paper/taxpasta_diagram_v0.4.png b/paper/taxpasta_diagram_v0.4.png new file mode 100644 index 0000000..39bf57c Binary files /dev/null and b/paper/taxpasta_diagram_v0.4.png differ