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Britisch-ize the document
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jfy133 authored and Midnighter committed Jul 8, 2023
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Expand Up @@ -105,7 +105,7 @@ Assessment tooL (OPAL) [@meyer_assessing_2019] was developed. Creating a
community wide assessment faced many of the challenges presented here, however,
the chosen solution was to mandate a single output format[^8] for all profilers
participating in the challenge. Furthermore, OPAL is an integrated tool
performing assessment and visualization, whereas TAXPASTA follows the UNIX
performing assessment and visualisation, whereas TAXPASTA follows the UNIX
philosophy[^9] of doing one thing and doing it well. The BIOM format
[@mcdonald_biological_2012] was created with a similar intention of
standardising a storage format for microbiome analyses. However, transforming
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For maximum compatibility, TAXPASTA offers a wide range of familiar output file
formats, such as text-based, tabular formats (CSV[^1], TSV[^2]), spreadsheets
(ODS[^3], XLSX[^4]), optimized binary formats (Apache Arrow[^5] and
(ODS[^3], XLSX[^4]), optimised binary formats (Apache Arrow[^5] and
Parquet[^6]), and the HDF5-based[^7] BIOM format [@mcdonald_biological_2012].
We hope that this will let researchers plug and play TAXPASTA into their
existing analysis workflows in a wide range of settings.
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