Discussions

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  denoise3d can't allocate memory for cpu run

  wangrsc asked Aug 8, 2024 in Q&A · Unanswered

  

  

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  Topaz for Electron Microscopy?

  declined000 asked Jul 11, 2024 in Q&A · Unanswered

  

  

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  How to evaluate the performance of a trained model on another dataset?

  Gratia2533 asked May 11, 2024 in Q&A · Unanswered

  

  

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  Computing Metrics

  ojasvijain started Dec 19, 2023 in General

  

  

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  "score" in the output file

  ojasvijain started Feb 13, 2024 in General

  

  

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  How to optimize Topaz training parameters and interpret training outputs

  tonyl4 asked Jun 8, 2023 in Q&A · Unanswered

  

  

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  Radius for topaz train

  annwhoorma started Feb 27, 2024 in General

  

  

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  Topaz particle picking issue

  liningsdu started Dec 14, 2023 in cryoSPARC

  

  

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  TypeError: concat() takes 1 positional argument but 2 were given

  RashedCh started Nov 18, 2023 in cryoSPARC · Closed

  

  

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  Topaz training erro

  wuhucryoem started Jul 24, 2023 in cryoSPARC

  

  

  

  

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  Topaz 2D Training -> Nan Loss + Error

  3P1L asked May 6, 2023 in Q&A · Unanswered

  

  

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  prebuilt Singularity image for Topaz has not been updated

  refolding started Feb 22, 2023 in General

  

  

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  #️⃣

  Filament training and picking within cryoSPARC

  nyyallstar07 started Sep 14, 2022 in cryoSPARC

  

  

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  Topaz Denoise3D error

  ChrisLoSK started Mar 8, 2023 in General

  

  

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  topaz denoiser training error: TypeError: Cannot handle this data type: (1, 1, 4092), <f4

  ChrisLoSK asked Nov 21, 2022 in Q&A · Unanswered

  

  

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  Topaz questions on difficult data, from an unexperienced user !

  Gia1975 asked Nov 17, 2022 in Q&A · Unanswered

  

  

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  jupyter notebook walkthrough troubleshooting

  clauvasq asked Feb 10, 2021 in Q&A · Unanswered

  

  

  

  

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  Numpy Array not Writable error

  nthevan started Oct 18, 2022 in General

  

  

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  denoise 3d GPU error

  mdjflores asked Aug 23, 2022 in Q&A · Unanswered

  

  

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  Figure Of Merit value difference between ResNet8 and Conv127

  k-haru asked Jul 12, 2022 in Q&A · Answered

  

  

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  How to Reproduce the Full Pretraining

  vzmath started Jun 25, 2022 in General

  

  

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  #️⃣

  Topaz wrapper referring back to .eer movies when inputting motion corrected micrographs

  ArmandoPach started Apr 26, 2022 in cryoSPARC

  

  

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  NVIDIA CUDA version support question

  cron-weasley asked Apr 20, 2022 in Q&A · Unanswered

  

  

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  Topaz denoise training on super-res data

  rpiwowarczyk asked Mar 27, 2022 in Q&A · Unanswered

  

  

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  Can denoising be applied in a particle-wise situation?

  zhaotf16 asked Jan 18, 2022 in Q&A · Answered

  

  

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