From 86156d04f46ea6b6a40fbab48b6ceee3d0870bdf Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Thu, 8 Aug 2024 21:01:10 +0200 Subject: [PATCH 01/15] init sth that's working --- .github/workflows/ci.yml | 2 +- ext/CuThunderboltExt.jl | 6 +++--- src/Thunderbolt.jl | 1 + src/accelerator/dofhandler.jl | 2 +- src/collections.jl | 2 +- src/discretization/operator.jl | 6 +++--- src/discretization/rsafdq-operator.jl | 2 +- src/modeling/core/coefficients.jl | 8 ++++---- src/modeling/core/coordinate_systems.jl | 4 ++-- src/solver/interface.jl | 6 +++--- src/transfer_operators.jl | 2 +- src/utils.jl | 5 +++-- test/test_coefficients.jl | 2 +- test/test_mesh.jl | 2 +- 14 files changed, 26 insertions(+), 24 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 6f4b6528..00b7ee45 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -32,7 +32,7 @@ jobs: run: | julia --color=yes --project=. -e ' using Pkg - Pkg.add(url="https://github.com/Ferrite-FEM/Ferrite.jl.git", rev="bdd5b41"); + Pkg.add(url="https://github.com/Ferrite-FEM/Ferrite.jl.git"); Pkg.instantiate(); Pkg.precompile();' - uses: julia-actions/julia-runtest@v1 diff --git a/ext/CuThunderboltExt.jl b/ext/CuThunderboltExt.jl index 6d8af3f6..a757604e 100644 --- a/ext/CuThunderboltExt.jl +++ b/ext/CuThunderboltExt.jl @@ -99,15 +99,15 @@ function Thunderbolt._pointwise_step_outer_kernel!(f::AbstractPointwiseFunction, return true end -_create_sparsity_pattern(dh::GPUDofHandler, A::SparseMatrixCSR, ::CuVector) = CuSparseMatrixCSR(A) -_create_sparsity_pattern(dh::GPUDofHandler, A::SparseMatrixCSC, ::CuVector) = CuSparseMatrixCSC(A) +_allocate_matrix(dh::GPUDofHandler, A::SparseMatrixCSR, ::CuVector) = CuSparseMatrixCSR(A) +_allocate_matrix(dh::GPUDofHandler, A::SparseMatrixCSC, ::CuVector) = CuSparseMatrixCSC(A) Thunderbolt.create_system_vector(::Type{<:CuVector{T}}, f::AbstractSemidiscreteFunction) where T = CUDA.zeros(T, solution_size(f)) Thunderbolt.create_system_vector(::Type{<:CuVector{T}}, dh::DofHandler) where T = CUDA.zeros(T, ndofs(dh)) function Thunderbolt.create_system_matrix(SpMatType::Type{<:Union{CUSPARSE.CuSparseMatrixCSC, CUSPARSE.CuSparseMatrixCSR}}, dh::AbstractDofHandler) # FIXME in general the pattern is not symmetric - Acpu = create_sparsity_pattern(dh) + Acpu = allocate_matrix(dh) colptrgpu = CuArray(Acpu.colptr) rowvalgpu = CuArray(Acpu.rowval) nzvalgpu = CuArray(Acpu.nzval) diff --git a/src/Thunderbolt.jl b/src/Thunderbolt.jl index 513b274b..b5eb6c65 100644 --- a/src/Thunderbolt.jl +++ b/src/Thunderbolt.jl @@ -25,6 +25,7 @@ solution_size(f::GenericSplitFunction) = OS.function_size(f) import Ferrite: AbstractDofHandler, AbstractGrid, AbstractRefShape, AbstractCell, get_grid import Ferrite: vertices, edges, faces, sortedge, sortface import Ferrite: get_coordinate_type, getspatialdim +import Ferrite: reference_shape_value import DiffEqBase#: AbstractDiffEqFunction, AbstractDEProblem @reexport import LinearSolve diff --git a/src/accelerator/dofhandler.jl b/src/accelerator/dofhandler.jl index 9ae9231e..803b083f 100644 --- a/src/accelerator/dofhandler.jl +++ b/src/accelerator/dofhandler.jl @@ -66,4 +66,4 @@ end Ferrite.isclosed(::GPUDofHandler) = true # TODO needs an update after https://github.com/Ferrite-FEM/Ferrite.jl/pull/888 is merged -Ferrite.create_sparsity_pattern(dh::GPUDofHandler) = _create_sparsity_pattern(dh, create_sparsity_pattern(dh.dh), dh.gpudata.cellset) +Ferrite.allocate_matrix(dh::GPUDofHandler) = _allocate_matrix(dh, allocate_matrix(dh.dh), dh.gpudata.cellset) diff --git a/src/collections.jl b/src/collections.jl index fb99758f..cda1f5aa 100644 --- a/src/collections.jl +++ b/src/collections.jl @@ -91,7 +91,7 @@ end function getquadraturerule(nqr::NodalQuadratureRuleCollection, cell::AbstractCell{ref_shape}) where {ref_shape} ip = getinterpolation(nqr.ipc, cell) positions = Ferrite.reference_coordinates(ip) - return QuadratureRule{ref_shape, eltype(first(positions))}([NaN for _ in 1:length(positions)], positions) + return QuadratureRule{ref_shape}([NaN for _ in 1:length(positions)], positions) end getquadraturerule(qrc::NodalQuadratureRuleCollection, sdh::SubDofHandler) = getquadraturerule(qrc, get_first_cell(sdh)) diff --git a/src/discretization/operator.jl b/src/discretization/operator.jl index e7fecfaf..c396429a 100644 --- a/src/discretization/operator.jl +++ b/src/discretization/operator.jl @@ -156,7 +156,7 @@ end function AssembledNonlinearOperator(dh::AbstractDofHandler, field_name::Symbol, element_model, element_qrc::QuadratureRuleCollection) AssembledNonlinearOperator( - create_sparsity_pattern(dh), + allocate_matrix(dh), element_model, element_qrc, nothing, nothing, nothing, nothing, @@ -167,7 +167,7 @@ end #Utility constructor to get the nonlinear operator for a single field problem. function AssembledNonlinearOperator(dh::AbstractDofHandler, field_name::Symbol, element_model, element_qrc::QuadratureRuleCollection, boundary_model, boundary_qrc::FacetQuadratureRuleCollection) AssembledNonlinearOperator( - create_sparsity_pattern(dh), + allocate_matrix(dh), element_model, element_qrc, boundary_model, boundary_qrc, nothing, nothing, @@ -177,7 +177,7 @@ end function AssembledNonlinearOperator(dh::AbstractDofHandler, field_name::Symbol, element_model, element_qrc::QuadratureRuleCollection, boundary_model, boundary_qrc::FacetQuadratureRuleCollection, tying_model, tying_qr) AssembledNonlinearOperator( - create_sparsity_pattern(dh), + allocate_matrix(dh), element_cache, element_qrc, boundary_cache, boundary_qrc, tying_cache, tying_qrc, diff --git a/src/discretization/rsafdq-operator.jl b/src/discretization/rsafdq-operator.jl index ab532413..ec93dd67 100644 --- a/src/discretization/rsafdq-operator.jl +++ b/src/discretization/rsafdq-operator.jl @@ -18,7 +18,7 @@ function AssembledRSAFDQ2022Operator(dh::AbstractDofHandler, field_name::Symbol, element_qr = getquadraturerule(element_qrc, firstcell) boundary_qr = getquadraturerule(boundary_qrc, firstcell) - Jmech = create_sparsity_pattern(dh) + Jmech = allocate_matrix(dh) num_chambers = length(tying.chambers) block_sizes = [ndofs(dh), num_chambers] diff --git a/src/modeling/core/coefficients.jl b/src/modeling/core/coefficients.jl index 5f77914d..3510ab95 100644 --- a/src/modeling/core/coefficients.jl +++ b/src/modeling/core/coefficients.jl @@ -20,7 +20,7 @@ duplicate_for_parallel(cache::FieldCoefficientCache) = cache return _create_field_coefficient_cache(coefficient, coefficient.ip_collection, qr, sdh) end -function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::ScalarInterpolationCollection, qr::QuadratureRule{<:Any, T}, sdh::SubDofHandler) where T +function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::ScalarInterpolationCollection, qr::QuadratureRule{<:Any, <:AbstractArray{T}}, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getinterpolation(coefficient.ip_collection, cell) fv = Ferrite.FunctionValues{0}(T, ip, qr, ip^3) @@ -28,7 +28,7 @@ function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::Sca return FieldCoefficientCache(coefficient.elementwise_data, FerriteUtils.StaticInterpolationValues(fv.ip, SMatrix{Nξs[1], Nξs[2]}(fv.Nξ), nothing)) end -function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::VectorizedInterpolationCollection, qr::QuadratureRule{<:Any, T}, sdh::SubDofHandler) where T +function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::VectorizedInterpolationCollection, qr::QuadratureRule{<:Any, <:AbstractArray{T}}, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getinterpolation(coefficient.ip_collection, cell) fv = Ferrite.FunctionValues{0}(T, ip.ip, qr, ip) @@ -143,7 +143,7 @@ end duplicate_for_parallel(cache::CartesianCoordinateSystemCache) = cache -function setup_coefficient_cache(coefficient::CoordinateSystemCoefficient{<:CartesianCoordinateSystem}, qr::QuadratureRule{<:Any,T}, sdh::SubDofHandler) where T +function setup_coefficient_cache(coefficient::CoordinateSystemCoefficient{<:CartesianCoordinateSystem}, qr::QuadratureRule{<:Any, <:AbstractArray{T}}, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getcoordinateinterpolation(coefficient.cs, cell) fv = Ferrite.FunctionValues{0}(T, ip.ip, qr, ip) # We scalarize the interpolation again as an optimization step @@ -168,7 +168,7 @@ end duplicate_for_parallel(cache::LVCoordinateSystemCache) = cache -function setup_coefficient_cache(coefficient::CoordinateSystemCoefficient{<:LVCoordinateSystem}, qr::QuadratureRule{<:Any, T}, sdh::SubDofHandler) where T +function setup_coefficient_cache(coefficient::CoordinateSystemCoefficient{<:LVCoordinateSystem}, qr::QuadratureRule{<:Any, <:AbstractArray{T}}, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getcoordinateinterpolation(coefficient.cs, cell) ip_geo = ip^3 diff --git a/src/modeling/core/coordinate_systems.jl b/src/modeling/core/coordinate_systems.jl index eec7a849..190cf24d 100644 --- a/src/modeling/core/coordinate_systems.jl +++ b/src/modeling/core/coordinate_systems.jl @@ -85,7 +85,7 @@ function compute_lv_coordinate_system(mesh::SimpleMesh{3}, subdomains::Vector{St # Assemble Laplacian # TODO use bilinear operator for performance - K = create_sparsity_pattern(dh) + K = allocate_matrix(dh) assembler = start_assemble(K) for sdh in dh.subdofhandlers @@ -183,7 +183,7 @@ function compute_midmyocardial_section_coordinate_system(mesh::SimpleMesh{3}, su # Assemble Laplacian # TODO use bilinear operator - K = create_sparsity_pattern(dh) + K = allocate_matrix(dh) assembler = start_assemble(K) for sdh in dh.subdofhandlers diff --git a/src/solver/interface.jl b/src/solver/interface.jl index f22f2610..2c976cb8 100644 --- a/src/solver/interface.jl +++ b/src/solver/interface.jl @@ -40,7 +40,7 @@ end function setup_assembled_operator(integrator::AbstractBilinearIntegrator, system_matrix_type::Type, dh::AbstractDofHandler, field_name::Symbol, qrc::QuadratureRuleCollection) A = create_system_matrix(system_matrix_type, dh) - A_ = create_sparsity_pattern(dh) # TODO how to query this? + A_ = allocate_matrix(dh) # TODO how to query this? return AssembledBilinearOperator( A, A_, integrator, qrc, @@ -103,12 +103,12 @@ update_constraints_block!(f::NullFunction, i::Block, solver_cache::AbstractTimeS create_system_matrix(T::Type{<:AbstractMatrix}, f::AbstractSemidiscreteFunction) = create_system_matrix(T, f.dh) function create_system_matrix(::Type{<:ThreadedSparseMatrixCSR{Tv,Ti}}, dh::AbstractDofHandler) where {Tv,Ti} - Acsct = transpose(convert(SparseMatrixCSC{Tv,Ti}, create_sparsity_pattern(dh))) + Acsct = transpose(convert(SparseMatrixCSC{Tv,Ti}, allocate_matrix(dh))) return ThreadedSparseMatrixCSR(Acsct) end function create_system_matrix(SpMatType::Type{<:SparseMatrixCSC}, dh::AbstractDofHandler) - A = convert(SpMatType, create_sparsity_pattern(dh)) + A = convert(SpMatType, allocate_matrix(dh)) return A end diff --git a/src/transfer_operators.jl b/src/transfer_operators.jl index cefbb08f..2b15f598 100644 --- a/src/transfer_operators.jl +++ b/src/transfer_operators.jl @@ -15,7 +15,7 @@ function _spatial_coordinate(interpolation::ScalarInterpolation, ξ::Vec{<:Any,T x = zero(Vec{sdim, T}) @inbounds for j in 1:n_basefuncs - M = shape_value(interpolation, ξ, j) + M = reference_shape_value(interpolation, ξ, j) x += M * cell_coordinates[j] end return x diff --git a/src/utils.jl b/src/utils.jl index 81420870..abef10a9 100644 --- a/src/utils.jl +++ b/src/utils.jl @@ -160,7 +160,7 @@ function mul!(y::AbstractVector{<:Number}, A_::ThreadedSparseMatrixCSR, x::Abstr A.n == size(x, 1) || throw(DimensionMismatch()) A.m == size(y, 1) || throw(DimensionMismatch()) - @batch minbatch = size(y, 1) ÷ Threads.nthreads() for row in 1:size(y, 1) + @batch minbatch = max(1, size(y, 1) ÷ Threads.nthreads()) for row in 1:size(y, 1) @inbounds begin v = zero(eltype(y)) for nz in nzrange(A, row) @@ -377,7 +377,8 @@ end # Transfer the element data into a vector function ea_collapse!(b::Vector, bes::EAVector) ndofs = size(b, 1) - @batch minbatch=ndofs÷Threads.nthreads() for dof ∈ 1:ndofs + @info "ndofs is is is is is " ndofs + @batch minbatch= max(1, ndofs÷Threads.nthreads()) for dof ∈ 1:ndofs _ea_collapse_kernel!(b, dof, bes) end end diff --git a/test/test_coefficients.jl b/test/test_coefficients.jl index 3d916457..b58d3b23 100644 --- a/test/test_coefficients.jl +++ b/test/test_coefficients.jl @@ -3,7 +3,7 @@ cell_cache = Ferrite.CellCache(grid) qp1 = QuadraturePoint(1, Vec((0.0,))) qp2 = QuadraturePoint(2, Vec((0.1,))) - qr = QuadratureRule{RefLine,Float64}([1.0, 1.0], [Vec{1}((0.0,)), Vec{1}((0.1,))]) + qr = QuadratureRule{RefLine}([1.0, 1.0], [Vec{1}((0.0,)), Vec{1}((0.1,))]) ip_collection = LagrangeCollection{1}() dh = DofHandler(grid) add!(dh, :u, getinterpolation(ip_collection, first(grid.cells))) diff --git a/test/test_mesh.jl b/test/test_mesh.jl index a113de3f..1b3457f0 100644 --- a/test/test_mesh.jl +++ b/test/test_mesh.jl @@ -9,7 +9,7 @@ cell = getcells(grid, cellid(cc)) ref_shape = Ferrite.getrefshape(cell) ip = getinterpolation(LagrangeCollection{1}(), ref_shape) - qr = QuadratureRule{ref_shape, Float64}([1.0], [Vec(ntuple(_->0.1, Ferrite.getrefdim(cell)))]) # TODO randomize point + qr = QuadratureRule{ref_shape}([1.0], [Vec(ntuple(_->0.1, Ferrite.getrefdim(cell)))]) # TODO randomize point gv = Ferrite.GeometryMapping{1}(Float64, ip, qr) x = getcoordinates(cc) mapping = Ferrite.calculate_mapping(gv, 1, x) From 781312db7160a4d749c9556115661483566ae3dc Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Thu, 8 Aug 2024 21:02:53 +0200 Subject: [PATCH 02/15] ehm ehm --- src/utils.jl | 1 - 1 file changed, 1 deletion(-) diff --git a/src/utils.jl b/src/utils.jl index abef10a9..29e0daf8 100644 --- a/src/utils.jl +++ b/src/utils.jl @@ -377,7 +377,6 @@ end # Transfer the element data into a vector function ea_collapse!(b::Vector, bes::EAVector) ndofs = size(b, 1) - @info "ndofs is is is is is " ndofs @batch minbatch= max(1, ndofs÷Threads.nthreads()) for dof ∈ 1:ndofs _ea_collapse_kernel!(b, dof, bes) end From 0c58bbbca5cd6b3e910d54e9e272281e715d7738 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Thu, 8 Aug 2024 21:18:20 +0200 Subject: [PATCH 03/15] maybe it works now --- .github/workflows/docs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index dc467e03..af77aaea 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -22,7 +22,7 @@ jobs: ~/.julia/registries key: .julia-docs-${{ hashFiles('docs/Project.toml', 'docs/Manifest.toml') }} - name: Install dependencies - run: julia --project=docs -e 'using Pkg; Pkg.instantiate(); Pkg.precompile()' + run: julia --project=docs -e 'using Pkg; Pkg.add(url="https://github.com/Ferrite-FEM/Ferrite.jl.git"); Pkg.instantiate(); Pkg.precompile()' - name: Build and deploy env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # If authenticating with GitHub Actions token From 925a7fa72589dcc9cb98d6fe047d8c9ab026814b Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 10:42:25 +0200 Subject: [PATCH 04/15] rev --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 00b7ee45..917a26f8 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -32,7 +32,7 @@ jobs: run: | julia --color=yes --project=. -e ' using Pkg - Pkg.add(url="https://github.com/Ferrite-FEM/Ferrite.jl.git"); + Pkg.add(url="https://github.com/Ferrite-FEM/Ferrite.jl.git", rev="b6976d3"); Pkg.instantiate(); Pkg.precompile();' - uses: julia-actions/julia-runtest@v1 From 6050b58166f09328785d46071e19f94bbd33a2b9 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 10:43:24 +0200 Subject: [PATCH 05/15] undo docs --- .github/workflows/docs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index af77aaea..dc467e03 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -22,7 +22,7 @@ jobs: ~/.julia/registries key: .julia-docs-${{ hashFiles('docs/Project.toml', 'docs/Manifest.toml') }} - name: Install dependencies - run: julia --project=docs -e 'using Pkg; Pkg.add(url="https://github.com/Ferrite-FEM/Ferrite.jl.git"); Pkg.instantiate(); Pkg.precompile()' + run: julia --project=docs -e 'using Pkg; Pkg.instantiate(); Pkg.precompile()' - name: Build and deploy env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # If authenticating with GitHub Actions token From 9506af0e128400e00b53dff258e47563bcdd4aee Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 11:24:52 +0200 Subject: [PATCH 06/15] remove todo --- src/accelerator/dofhandler.jl | 1 - 1 file changed, 1 deletion(-) diff --git a/src/accelerator/dofhandler.jl b/src/accelerator/dofhandler.jl index 803b083f..a8fa2cbb 100644 --- a/src/accelerator/dofhandler.jl +++ b/src/accelerator/dofhandler.jl @@ -65,5 +65,4 @@ end Ferrite.isclosed(::GPUDofHandler) = true -# TODO needs an update after https://github.com/Ferrite-FEM/Ferrite.jl/pull/888 is merged Ferrite.allocate_matrix(dh::GPUDofHandler) = _allocate_matrix(dh, allocate_matrix(dh.dh), dh.gpudata.cellset) From 396b368ea9ea14cf3c54abb4b7a2bc1218bc6350 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 11:25:11 +0200 Subject: [PATCH 07/15] use T from FieldCoefficient --- src/modeling/core/coefficients.jl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/modeling/core/coefficients.jl b/src/modeling/core/coefficients.jl index 3510ab95..7aafb5c4 100644 --- a/src/modeling/core/coefficients.jl +++ b/src/modeling/core/coefficients.jl @@ -20,7 +20,7 @@ duplicate_for_parallel(cache::FieldCoefficientCache) = cache return _create_field_coefficient_cache(coefficient, coefficient.ip_collection, qr, sdh) end -function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::ScalarInterpolationCollection, qr::QuadratureRule{<:Any, <:AbstractArray{T}}, sdh::SubDofHandler) where T +function _create_field_coefficient_cache(coefficient::FieldCoefficient{T}, ipc::ScalarInterpolationCollection, qr::QuadratureRule, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getinterpolation(coefficient.ip_collection, cell) fv = Ferrite.FunctionValues{0}(T, ip, qr, ip^3) @@ -28,7 +28,7 @@ function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::Sca return FieldCoefficientCache(coefficient.elementwise_data, FerriteUtils.StaticInterpolationValues(fv.ip, SMatrix{Nξs[1], Nξs[2]}(fv.Nξ), nothing)) end -function _create_field_coefficient_cache(coefficient::FieldCoefficient, ipc::VectorizedInterpolationCollection, qr::QuadratureRule{<:Any, <:AbstractArray{T}}, sdh::SubDofHandler) where T +function _create_field_coefficient_cache(coefficient::FieldCoefficient{T}, ipc::VectorizedInterpolationCollection, qr::QuadratureRule, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getinterpolation(coefficient.ip_collection, cell) fv = Ferrite.FunctionValues{0}(T, ip.ip, qr, ip) From d0297e8476647bfbefd70e6c5e850366604d59aa Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 12:48:46 +0200 Subject: [PATCH 08/15] examples --- Project.toml | 3 +- examples/Manifest.toml | 342 ++++++++++++++++------------------------- 2 files changed, 136 insertions(+), 209 deletions(-) diff --git a/Project.toml b/Project.toml index 1d6d4fcd..97b7d0e5 100644 --- a/Project.toml +++ b/Project.toml @@ -5,6 +5,7 @@ version = "0.0.1-DEV" [deps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" +CirculatorySystemModels = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" CommonSolve = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" @@ -39,10 +40,10 @@ CuThunderboltExt = "CUDA" Aqua = "0.8" BlockArrays = "1" DiffEqBase = "6.151.3" -julia = "1.10" LinearSolve = "2" ModelingToolkit = "9" UnPack = "1" +julia = "1.10" [extras] Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595" diff --git a/examples/Manifest.toml b/examples/Manifest.toml index 781997ab..27ed2ebb 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "0eb4a7f9ab83e8a33641afe48f1132782504843d" [[deps.ADTypes]] -git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.1" +version = "1.7.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -90,9 +90,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "8c5b39db37c1d0340bf3b14895fba160c2d6cbb5" +git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.14.0" +version = "7.15.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -103,7 +103,7 @@ version = "7.14.0" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysExt = "StaticArrays" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] @@ -115,7 +115,7 @@ version = "7.14.0" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] @@ -149,16 +149,6 @@ git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" -[[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "71f605effb24081b09cae943ba39ef9ca90c04f4" -uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.7.2" -weakdeps = ["SparseArrays"] - - [deps.BandedMatrices.extensions] - BandedMatricesSparseArraysExt = "SparseArrays" - [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -178,22 +168,12 @@ deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "5c0ffe1dff8cb7112de075f1b1cb32191675fcba" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "1.1.0" -weakdeps = ["BandedMatrices"] [deps.BlockArrays.extensions] BlockArraysBandedMatricesExt = "BandedMatrices" -[[deps.BoundaryValueDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools"] -git-tree-sha1 = "4e746d02f1d7ef513c1441ee58f3b20f5d10ad03" -uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.9.0" - - [deps.BoundaryValueDiffEq.extensions] - BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" - - [deps.BoundaryValueDiffEq.weakdeps] - ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" + [deps.BlockArrays.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -239,12 +219,6 @@ git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.0+2" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" @@ -256,10 +230,10 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.CirculatorySystemModels]] -deps = ["CSV", "DataFrames", "DifferentialEquations", "ModelingToolkit"] -git-tree-sha1 = "beba45dbc8bd1c4b84db4ae74e082d78d1e689b6" +deps = ["CSV", "DataFrames", "ModelingToolkit"] +git-tree-sha1 = "190e4a0e80a6f99a5b4c65393ca307874f2a1634" repo-rev = "main" -repo-url = "https://github.com/termi-official/CirculatorySystemModels.jl" +repo-url = "https://github.com/TS-CUBED/CirculatorySystemModels.jl" uuid = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" version = "0.4.0" @@ -271,9 +245,9 @@ version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.5" +version = "0.7.6" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -338,9 +312,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -423,23 +397,23 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.14.10+0" + [[deps.DelaunayTriangulation]] deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] -git-tree-sha1 = "1abb6a8541775a0bf82749ac8373a34e9f2f71e0" +git-tree-sha1 = "b5f1c6532d2ea71e99b74231b0a3d53fba846ced" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "1.1.1" - -[[deps.DelayDiffEq]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "f84e4ef36cb68b77fe10c77bdf59c980709f6fdf" -uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.47.4" +version = "1.1.3" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.152.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -451,6 +425,7 @@ version = "6.151.5" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -464,21 +439,25 @@ version = "6.151.5" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" -weakdeps = ["OrdinaryDiffEq", "Sundials"] +version = "3.7.0" + + [deps.DiffEqCallbacks.weakdeps] + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ed0158e758723b4d429afbbb5d98c5afd3458dc1" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "ab1e6515ce15f01316a9825b02729fefa51726bd" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.22.0" +version = "5.23.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -498,17 +477,11 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" -[[deps.DifferentialEquations]] -deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] -git-tree-sha1 = "81042254a307980b8ab5b67033aca26c2e157ebb" -uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -version = "7.13.0" - [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" +git-tree-sha1 = "5f9a52dc40218e85daa695600733f5ccaa7eb80b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.9" +version = "0.5.13" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -557,9 +530,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" +git-tree-sha1 = "0e0a1264b0942f1f3abb2b30891f2a590cc652ac" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.109" +version = "0.25.110" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -592,12 +565,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.DynamicPolynomials]] deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" @@ -634,9 +601,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" +git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -706,12 +673,6 @@ git-tree-sha1 = "72a4842f93e734f378cf381dae2ca4542f019d23" uuid = "4fce6fc7-ba6a-5f4c-898f-77e99806d6f8" version = "1.3.8+0" -[[deps.FastAlmostBandedMatrices]] -deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] -git-tree-sha1 = "a92b5820ea38da3b50b626cc55eba2b074bb0366" -uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" -version = "0.1.3" - [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" @@ -731,9 +692,9 @@ version = "2.0.4" [[deps.Ferrite]] deps = ["EnumX", "ForwardDiff", "LinearAlgebra", "NearestNeighbors", "OrderedCollections", "Preferences", "Reexport", "SparseArrays", "StaticArrays", "Tensors", "WriteVTK"] -git-tree-sha1 = "3ed81140fa5116369d88a9b24f3d4d710a9ef158" -repo-rev = "6dfa0e4" -repo-url = "https://github.com/Ferrite-FEM/Ferrite.jl.git" +git-tree-sha1 = "25167c55b7681d131cc45e3c8d097274bf67bb34" +repo-rev = "b6976d3" +repo-url = "https://github.com/Ferrite-FEM/Ferrite.jl" uuid = "c061ca5d-56c9-439f-9c0e-210fe06d3992" version = "0.3.14" @@ -785,15 +746,15 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FindFirstFunctions]] -git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" +git-tree-sha1 = "fa0ba2042021409deb144f868abafde0b06be8f0" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.2.0" +version = "1.3.0" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] +git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" +version = "2.24.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -869,9 +830,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.4.12" [[deps.Future]] deps = ["Random"] @@ -884,10 +845,10 @@ uuid = "f7f18e0c-5ee9-5ccd-a5bf-e8befd85ed98" version = "3.4.3" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "3f74912a156096bd8fdbef211eff66ab446e7297" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+0" +version = "3.4.0+1" [[deps.GLMakie]] deps = ["ColorTypes", "Colors", "FileIO", "FixedPointNumbers", "FreeTypeAbstraction", "GLFW", "GeometryBasics", "LinearAlgebra", "Makie", "Markdown", "MeshIO", "ModernGL", "Observables", "PrecompileTools", "Printf", "ShaderAbstractions", "StaticArrays"] @@ -1001,10 +962,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.11.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.24" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -1114,14 +1075,14 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" +git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.15" -weakdeps = ["Dates"] +version = "0.1.16" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -1187,9 +1148,9 @@ version = "1.0.59" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "f12000093078e3dea1ee15de8bb35cfdc0014d97" +git-tree-sha1 = "f8235862db5cf813a52859ff82205d0f22f09a64" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.12.0" +version = "9.13.3" weakdeps = ["FastBroadcast"] [[deps.KLU]] @@ -1218,9 +1179,9 @@ version = "3.100.2+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "17.0.6+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1246,16 +1207,18 @@ version = "0.4.6" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "5b0d630f3020b82c0775a51d05895852f8506f50" +git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.4" +version = "0.16.5" [deps.Latexify.extensions] DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LayoutPointers]] @@ -1266,9 +1229,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "b8ea0abe6cc872996e87356951d286d25d485aba" +git-tree-sha1 = "507b423197fdd9e77b74aa2532c0a05eb7eb4004" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.1.9" +version = "2.2.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1291,12 +1254,6 @@ git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" version = "0.3.1" -[[deps.LevyArea]] -deps = ["LinearAlgebra", "Random", "SpecialFunctions"] -git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" -uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" -version = "1.0.0" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -1374,9 +1331,9 @@ version = "0.9.1" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" +version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1389,12 +1346,10 @@ uuid = "18c40d15-f7cd-5a6d-bc92-87468d86c5db" version = "5.0.0+0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "51a397cea70d9e8c00ad1dcd98258367c0a00158" -repo-rev = "main" -repo-url = "https://github.com/SciML/LinearSolve.jl.git" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "ee625f4053362526950661ce3022c7a483c6f8e5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.2" +version = "2.32.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1536,16 +1491,6 @@ git-tree-sha1 = "e1641f32ae592e415e3dbae7f4a188b5316d4b62" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" version = "0.6.1" -[[deps.MatrixFactorizations]] -deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "07c98fdf57c9b45b987cf250c4bdc7200fa39eb2" -uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "3.0.0" -weakdeps = ["BandedMatrices"] - - [deps.MatrixFactorizations.extensions] - MatrixFactorizationsBandedMatricesExt = "BandedMatrices" - [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" @@ -1621,9 +1566,9 @@ version = "0.5.6" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873" +git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.5" +version = "1.4.6" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1631,12 +1576,6 @@ git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" version = "7.8.3" -[[deps.NLsolve]] -deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] -git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" -uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" -version = "4.5.1" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" @@ -1661,9 +1600,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "3adb1e5945b5a6b1eaee754077f25ccc402edd7f" +git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.13.1" +version = "3.14.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1821,6 +1760,12 @@ git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f" uuid = "5432bcbf-9aad-5242-b902-cca2824c8663" version = "0.5.12" +[[deps.Pango_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "cb5a2ab6763464ae0f19c86c56c63d4a2b0f5bda" +uuid = "36c8627f-9965-5494-a995-c6b170f724f3" +version = "1.52.2+0" + [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" @@ -1863,10 +1808,10 @@ uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.4" [[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.15" +version = "0.7.16" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1893,9 +1838,9 @@ version = "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "d7f3f63331c7c8c81245b4ee2815b7d496365833" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" +version = "0.4.23" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1963,10 +1908,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -1996,10 +1941,10 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.26.0" +version = "3.27.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2007,6 +1952,7 @@ version = "3.26.0" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2016,6 +1962,7 @@ version = "3.26.0" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2056,9 +2003,9 @@ version = "0.7.1" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.2+0" +version = "0.4.3+0" [[deps.RoundingEmulator]] git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b" @@ -2100,9 +2047,9 @@ version = "0.6.43" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "380a059a9fd18a56d98e50ed98d40e1c1202e662" +git-tree-sha1 = "79564263adfdeb7a7110316c0bf0da55b95ab281" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.46.0" +version = "2.49.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2124,16 +2071,17 @@ version = "2.46.0" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "23b02c588ac9a17ecb276cc62ab37f3e4fe37b32" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" +version = "0.3.9" +weakdeps = ["SparseArrays"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" +git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.1" +version = "1.4.2" [[deps.Scratch]] deps = ["Dates"] @@ -2180,9 +2128,9 @@ version = "0.4.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" +git-tree-sha1 = "4d7a7c177bcb4c6dc465f09db91bfdb28c578919" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.11.0" +version = "1.12.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2229,9 +2177,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" +git-tree-sha1 = "c9e5d7ee75cf6a1ca3a22c9a6a4ef451792cf62b" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" +version = "2.20.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2254,10 +2202,10 @@ uuid = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" version = "0.6.7" [[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "277e10c002cd780a752bded3b95a8cbc791d646b" +deps = ["ADTypes", "Compat", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "996dff77d814c45c3f2342fa0113e4ad31e712e8" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.5" +version = "0.4.0" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -2288,10 +2236,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "1.1.1" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.1" +version = "1.8.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2342,18 +2290,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.SteadyStateDiffEq]] -deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"] -git-tree-sha1 = "1158cfdf0da5b0eacdfcfba7c16b174a37bdf6c7" -uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "2.2.0" - -[[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "b47f8ccc5bd06d5f7a643bf6671365ab9d6595d9" -uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.67.0" - [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" @@ -2388,18 +2324,6 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" -[[deps.Sundials]] -deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "e15f5a73f0d14b9079b807a9d1dac13e4302e997" -uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.24.0" - -[[deps.Sundials_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] -git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" -uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" -version = "5.2.2+0" - [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" @@ -2419,10 +2343,10 @@ uuid = "d1185830-fcd6-423d-90d6-eec64667417b" version = "2.1.2" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "44356a85991385883acd0f41ef66c6f770d9a2e7" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "b13a5417865e9934d043718f644e4a67519463ce" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.34.0" +version = "5.36.0" [deps.Symbolics.extensions] SymbolicsGroebnerExt = "Groebner" @@ -2486,7 +2410,7 @@ uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.2" [[deps.Thunderbolt]] -deps = ["Adapt", "BlockArrays", "CommonSolve", "DataStructures", "DiffEqBase", "Ferrite", "FerriteGmsh", "GPUArraysCore", "JLD2", "LinearAlgebra", "LinearSolve", "ModelingToolkit", "OrderedCollections", "Polyester", "ReadVTK", "Reexport", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "SymbolicIndexingInterface", "Tensors", "TimerOutputs", "UnPack", "Unrolled", "WriteVTK"] +deps = ["Adapt", "BlockArrays", "CirculatorySystemModels", "CommonSolve", "DataStructures", "DiffEqBase", "Ferrite", "FerriteGmsh", "GPUArraysCore", "JLD2", "LinearAlgebra", "LinearSolve", "ModelingToolkit", "OrderedCollections", "Polyester", "ReadVTK", "Reexport", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "SymbolicIndexingInterface", "Tensors", "TimerOutputs", "UnPack", "Unrolled", "WriteVTK"] path = ".." uuid = "909927c2-98d5-4a67-bba9-79f03a9ad49b" version = "0.0.1-DEV" @@ -2515,13 +2439,9 @@ uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.29" [[deps.TranscodingStreams]] -git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a" +git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.1" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.2" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] @@ -2797,6 +2717,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" + [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" From 7eefe7f46b00d7b94f174954bdca8d93f9f992e3 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 12:53:28 +0200 Subject: [PATCH 09/15] docs --- docs/Manifest.toml | 559 ++++++++++++++++++++++++++++----------------- docs/Project.toml | 1 + 2 files changed, 349 insertions(+), 211 deletions(-) diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 55652263..ba5c1e35 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.2" +julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "10393e005da80e7cccd115bc1f66261e5703adab" +project_hash = "13fc6159f3a3e4eddfb4796dc45234d1eadf7c0b" [[deps.ADTypes]] -git-tree-sha1 = "fc02d55798c1af91123d07915a990fbb9a10d146" +git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.3.0" +version = "1.7.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -26,9 +26,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.36" +version = "0.1.37" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" @@ -72,10 +72,10 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.11.0" +version = "7.15.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -85,6 +85,7 @@ version = "7.11.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -96,14 +97,15 @@ version = "7.11.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "420e2853770f50e5306b9d96b5a66f26e7c73bc6" +git-tree-sha1 = "ce2ca959f932f5dad70697dd93133d1167cf1e4e" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.4" +version = "1.10.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -116,9 +118,9 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.BibInternal]] -git-tree-sha1 = "0c62b284a52ec39ee831e10bf62c17d587dde75f" +git-tree-sha1 = "78aa378482bf6f338eef8f2440fb62a75ab1aaa3" uuid = "2027ae74-3657-4b95-ae00-e2f7d55c3e64" -version = "0.3.5" +version = "0.3.6" [[deps.BibParser]] deps = ["BibInternal", "DataStructures", "Dates", "JSONSchema", "YAML"] @@ -133,26 +135,26 @@ uuid = "f1be7e48-bf82-45af-a471-ae754a193061" version = "0.2.20" [[deps.Bijections]] -git-tree-sha1 = "c9b163bd832e023571e86d0b90d9de92a9879088" +git-tree-sha1 = "95f5c7e2d177b7ba1a240b0518038b975d72a8c0" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.6" +version = "0.1.7" [[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" +version = "0.1.9" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] -git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.5" +version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "35d4ec59c771dacfa7b5a916d50109537f6292ce" +git-tree-sha1 = "5c0ffe1dff8cb7112de075f1b1cb32191675fcba" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.0.1" +version = "1.1.0" [deps.BlockArrays.extensions] BlockArraysBandedMatricesExt = "BandedMatrices" @@ -168,9 +170,9 @@ version = "1.0.8+1" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "585a387a490f1c4bd88be67eea15b93da5e85db7" +git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.5" +version = "0.2.6" [[deps.CSTParser]] deps = ["Tokenize"] @@ -178,18 +180,18 @@ git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" version = "3.4.3" +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.0+2" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" @@ -200,23 +202,36 @@ weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" +[[deps.CirculatorySystemModels]] +deps = ["CSV", "DataFrames", "ModelingToolkit"] +git-tree-sha1 = "190e4a0e80a6f99a5b4c65393ca307874f2a1634" +repo-rev = "main" +repo-url = "https://github.com/TS-CUBED/CirculatorySystemModels.jl" +uuid = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" +version = "0.4.0" + [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.12" +version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.4" +version = "0.7.6" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" +[[deps.CommonEq]] +git-tree-sha1 = "6b0f0354b8eb954cdba708fb262ef00ee7274468" +uuid = "3709ef60-1bee-4518-9f2f-acd86f176c50" +version = "0.2.1" + [[deps.CommonMark]] deps = ["Crayons", "JSON", "PrecompileTools", "URIs"] git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071" @@ -234,11 +249,16 @@ git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" + [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -247,7 +267,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.1.0+0" +version = "1.1.1+0" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" @@ -270,15 +290,15 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.1" +version = "2.4.2" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.5" +version = "1.5.6" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -301,6 +321,12 @@ git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" @@ -317,10 +343,10 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "89d57776cafee3b69f594af8b8a0659cb03422c8" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.3" +version = "6.152.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -332,6 +358,7 @@ version = "6.151.3" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -345,19 +372,32 @@ version = "6.151.3" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" +version = "3.7.0" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" +[[deps.DiffEqNoiseProcess]] +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "ab1e6515ce15f01316a9825b02729fefa51726bd" +uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" +version = "5.23.0" + + [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" + + [deps.DiffEqNoiseProcess.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -372,9 +412,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "23c6df13ad8fcffde4b0596d798911d2e309fc2c" +git-tree-sha1 = "5f9a52dc40218e85daa695600733f5ccaa7eb80b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.5" +version = "0.5.13" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -423,9 +463,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" +git-tree-sha1 = "0e0a1264b0942f1f3abb2b30891f2a590cc652ac" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.109" +version = "0.25.110" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -472,12 +512,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.DynamicPolynomials]] deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" @@ -508,9 +542,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "88bc63137eb033acc3afe1b9875717889c718c46" +git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.5" +version = "0.7.8" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -533,6 +567,12 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.Expronicon]] +deps = ["MLStyle", "Pkg", "TOML"] +git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" +uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" +version = "0.8.5" + [[deps.FLTK_jll]] deps = ["Artifacts", "Fontconfig_jll", "FreeType2_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "Xorg_libXft_jll", "Xorg_libXinerama_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "72a4842f93e734f378cf381dae2ca4542f019d23" @@ -541,9 +581,9 @@ version = "1.3.8+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "2be93e36303143c6fffd07e2222bbade35194d9e" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.3" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -558,9 +598,9 @@ version = "2.0.4" [[deps.Ferrite]] deps = ["EnumX", "ForwardDiff", "LinearAlgebra", "NearestNeighbors", "OrderedCollections", "Preferences", "Reexport", "SparseArrays", "StaticArrays", "Tensors", "WriteVTK"] -git-tree-sha1 = "3ed81140fa5116369d88a9b24f3d4d710a9ef158" -repo-rev = "6dfa0e4" -repo-url = "https://github.com/Ferrite-FEM/Ferrite.jl.git" +git-tree-sha1 = "25167c55b7681d131cc45e3c8d097274bf67bb34" +repo-rev = "b6976d3" +repo-url = "https://github.com/Ferrite-FEM/Ferrite.jl" uuid = "c061ca5d-56c9-439f-9c0e-210fe06d3992" version = "0.3.14" @@ -584,6 +624,12 @@ git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" version = "1.16.3" +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -600,15 +646,15 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FindFirstFunctions]] -git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" +git-tree-sha1 = "fa0ba2042021409deb144f868abafde0b06be8f0" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.2.0" +version = "1.3.0" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] +git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" +version = "2.24.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -660,9 +706,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.4.12" [[deps.Future]] deps = ["Random"] @@ -722,9 +768,9 @@ version = "0.3.1" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "334d300809ae0a68ceee3444c6e99ded412bf0b3" +git-tree-sha1 = "ebd18c326fa6cee1efb7da9a3b45cf69da2ed4d9" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.1" +version = "1.11.2" [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] @@ -740,21 +786,21 @@ version = "1.10.8" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.16" +version = "0.1.17" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.10.0+0" +version = "2.11.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.24" [[deps.IOCapture]] deps = ["Logging", "Random"] @@ -772,11 +818,24 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" +[[deps.InlineStrings]] +git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.2" + + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" + + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.1.0+0" +version = "2024.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -794,14 +853,19 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.14" -weakdeps = ["Dates"] +version = "0.1.16" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -814,10 +878,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "bdbe8222d2f5703ad6a7019277d149ec6d78c301" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.48" +version = "0.4.51" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -845,9 +909,9 @@ version = "1.14.0" [[deps.JSONSchema]] deps = ["Downloads", "JSON", "JSON3", "URIs"] -git-tree-sha1 = "5f0bd0cd69df978fa64ccdcb5c152fbc705455a1" +git-tree-sha1 = "12b043193737b6f3224715c642a1ae2097b0e75d" uuid = "7d188eb4-7ad8-530c-ae41-71a32a6d4692" -version = "1.3.0" +version = "1.4.0" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -857,20 +921,17 @@ version = "3.0.3+0" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "1c4880cb70a5c6c87ea36deccc3d7f9e7969c18c" +git-tree-sha1 = "4b0b04fe63e02eed776181e14ebc1f48d787ceec" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.56" +version = "1.0.59" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "ed08d89318be7d625613f3c435d1f6678fba4850" +git-tree-sha1 = "f8235862db5cf813a52859ff82205d0f22f09a64" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.11.1" +version = "9.13.3" weakdeps = ["FastBroadcast"] - [deps.JumpProcesses.extensions] - JumpProcessFastBroadcastExt = "FastBroadcast" - [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" @@ -885,9 +946,9 @@ version = "0.9.6" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "17.0.6+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -913,23 +974,25 @@ version = "0.4.6" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.3" +version = "0.16.5" [deps.Latexify.extensions] DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.15" +version = "0.1.17" [[deps.LazilyInitializedFields]] git-tree-sha1 = "8f7f3cabab0fd1800699663533b6d5cb3fc0e612" @@ -938,9 +1001,9 @@ version = "1.2.2" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "899d44fa1a575653df5721a7fccb4988f7f09b62" +git-tree-sha1 = "507b423197fdd9e77b74aa2532c0a05eb7eb4004" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.0.4" +version = "2.2.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1035,9 +1098,9 @@ version = "0.9.1" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" +version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1050,10 +1113,10 @@ uuid = "18c40d15-f7cd-5a6d-bc92-87468d86c5db" version = "5.0.0+0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "7648cc20100504f4b453917aacc8520e9c0ecfb3" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "ee625f4053362526950661ce3022c7a483c6f8e5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.1" +version = "2.32.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1119,9 +1182,9 @@ version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" +git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.170" +version = "0.12.171" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -1141,9 +1204,9 @@ version = "0.1.4" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.1.0+0" +version = "2024.2.0+0" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1158,9 +1221,9 @@ version = "5.6.0+0" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7" +git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.1+1" +version = "4.2.2+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1228,10 +1291,10 @@ version = "1.2.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "8d43517ec8d9895f7d5f661167c05f54146a769d" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "1a1263bc643562b614e7eb88f7a1bf7a25136e53" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.19.0" +version = "9.33.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1258,9 +1321,9 @@ version = "0.5.6" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873" +git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.5" +version = "1.4.6" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1276,9 +1339,9 @@ version = "1.0.2" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "e4a9d37f0ee694da969def1f0dd4654642dfb51c" +git-tree-sha1 = "91a67b4d73842da90b526011fa85c5c4c9343fe0" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.17" +version = "0.4.18" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" @@ -1286,9 +1349,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "ed5500c66b726ec9fe8c1796c0a600353246ecf8" +git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.12.4" +version = "3.14.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1323,9 +1386,9 @@ uuid = "baad4e97-8daa-5946-aac2-2edac59d34e1" version = "7.6.2+2" [[deps.OffsetArrays]] -git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.14.0" +version = "1.14.1" weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] @@ -1365,6 +1428,18 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[deps.Optim]] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.9.4" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" @@ -1417,22 +1492,34 @@ uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.4" [[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "b3e2bae88cf07baf0a051fe09666b8ef97aefe93" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.14" +version = "0.7.16" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.1" +version = "0.2.2" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "d7f3f63331c7c8c81245b4ee2815b7d496365833" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" +version = "0.4.23" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1452,6 +1539,12 @@ git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.3" +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.2" + [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1463,9 +1556,9 @@ version = "1.2.0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +git-tree-sha1 = "e237232771fdafbae3db5c31275303e056afaa9f" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" +version = "2.10.1" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1475,11 +1568,17 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.ReadVTK]] deps = ["Base64", "CodecZlib", "Downloads", "LightXML", "Reexport", "VTKBase"] @@ -1494,10 +1593,10 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "980aabbeac7aee70d0e452a72b0c68b5b266cc7b" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.24.0" +version = "3.27.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1505,6 +1604,7 @@ version = "3.24.0" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -1514,6 +1614,7 @@ version = "3.24.0" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1540,6 +1641,12 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" +[[deps.ResettableStacks]] +deps = ["StaticArrays"] +git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" +version = "1.1.1" + [[deps.Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" @@ -1548,9 +1655,9 @@ version = "0.7.1" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.2+0" +version = "0.4.3+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1581,15 +1688,15 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.42" +version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "7a6c5c8c38d2e37f45d4686c3598c20c1aebf48e" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "79564263adfdeb7a7110316c0bf0da55b95ab281" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.41.3" +version = "2.49.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1611,16 +1718,23 @@ version = "2.41.3" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "23b02c588ac9a17ecb276cc62ab37f3e4fe37b32" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" +version = "0.3.9" +weakdeps = ["SparseArrays"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "6ab4beaf88dcdd2639bead916f2347f81dcacd0e" +git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.3.0" +version = "1.4.2" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.5" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1642,9 +1756,9 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "913754ccbbc78720a4542b56a6bdfbab1c84c8f2" +git-tree-sha1 = "4d7a7c177bcb4c6dc465f09db91bfdb28c578919" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.0" +version = "1.12.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1680,9 +1794,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" +git-tree-sha1 = "c9e5d7ee75cf6a1ca3a22c9a6a4ef451792cf62b" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" +version = "2.20.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1705,10 +1819,10 @@ uuid = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" version = "0.6.7" [[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "eed2446b3c3dd58f6ded3168998b8b2cb3fc9229" +deps = ["ADTypes", "Compat", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "996dff77d814c45c3f2342fa0113e4ad31e712e8" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.3" +version = "0.4.0" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1727,16 +1841,16 @@ weakdeps = ["ChainRulesCore"] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] +git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.10" +version = "1.1.1" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.0" +version = "1.8.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -1745,9 +1859,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "6e00379a24597be4ae1ee6b2d882e15392040132" +git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.5" +version = "1.9.7" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1789,9 +1903,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682" +git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.6" +version = "0.5.7" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -1799,6 +1913,12 @@ git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" version = "0.3.7" +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + [[deps.StructTypes]] deps = ["Dates", "UUIDs"] git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" @@ -1814,29 +1934,39 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" +[[deps.SymPyCore]] +deps = ["CommonEq", "CommonSolve", "Latexify", "LinearAlgebra", "Markdown", "RecipesBase", "SpecialFunctions"] +git-tree-sha1 = "bef92ec4c31804bdc9c44cb00eaf0348eac383fb" +uuid = "458b697b-88f0-4a86-b56b-78b75cfb3531" +version = "0.2.5" +weakdeps = ["TermInterface"] + + [deps.SymPyCore.extensions] + SymPyCoreTermInterfaceExt = "TermInterface" + [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "9bda3c1e2b771ab45fcbc264a078f612ca7ef427" +git-tree-sha1 = "c9fce29fb41a10677e24f74421ebe31220b81ad0" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.23" +version = "0.3.28" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] -git-tree-sha1 = "fb099adbd7504f1e68b4512828e9d94197a8b889" +git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3" uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" -version = "0.2.1" +version = "0.2.2" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] -git-tree-sha1 = "79813de27af70906d223fbd89ad90dba3d88a2b0" +git-tree-sha1 = "ba393ec8d6072e114d4fdd0d4e24fef3236ac21a" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "2.0.2" +version = "3.1.2" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "3669f8eba2720c595e16b038f33cb880c12ef7f7" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymPyCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "3679fafa2004511e135103588ebef1e3b96bb86d" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.30.3" +version = "6.0.0" [deps.Symbolics.extensions] SymbolicsGroebnerExt = "Groebner" @@ -1862,10 +1992,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" +version = "1.12.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1879,9 +2009,9 @@ uuid = "48a634ad-e948-5137-8d70-aa71f2a747f4" version = "1.16.1" [[deps.TermInterface]] -git-tree-sha1 = "6f0cee95e74d1f6891ba6b35b8b219fd3d11b567" +git-tree-sha1 = "d673e0aca9e46a2f63720201f55cc7b3e7169b16" uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c" -version = "0.4.1" +version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] @@ -1894,7 +2024,7 @@ uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.2" [[deps.Thunderbolt]] -deps = ["Adapt", "BlockArrays", "CommonSolve", "DataStructures", "DiffEqBase", "Ferrite", "FerriteGmsh", "GPUArraysCore", "JLD2", "LinearAlgebra", "LinearSolve", "ModelingToolkit", "OrderedCollections", "Polyester", "ReadVTK", "Reexport", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "SymbolicIndexingInterface", "Tensors", "TimerOutputs", "UnPack", "Unrolled", "WriteVTK"] +deps = ["Adapt", "BlockArrays", "CirculatorySystemModels", "CommonSolve", "DataStructures", "DiffEqBase", "Ferrite", "FerriteGmsh", "GPUArraysCore", "JLD2", "LinearAlgebra", "LinearSolve", "ModelingToolkit", "OrderedCollections", "Polyester", "ReadVTK", "Reexport", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "SymbolicIndexingInterface", "Tensors", "TimerOutputs", "UnPack", "Unrolled", "WriteVTK"] path = ".." uuid = "909927c2-98d5-4a67-bba9-79f03a9ad49b" version = "0.0.1-DEV" @@ -1917,24 +2047,20 @@ uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.29" [[deps.TranscodingStreams]] -git-tree-sha1 = "a947ea21087caba0a798c5e494d0bb78e3a1a3a0" +git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.9" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.2" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" +git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.0" +version = "0.2.1" [[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" +version = "0.1.9" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -1961,9 +2087,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" +git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.20.0" +version = "1.21.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1989,9 +2115,9 @@ version = "1.0.1" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "e863582a41c5731f51fd050563ae91eb33cf09be" +git-tree-sha1 = "e7f5b81c65eb858bed630fe006837b935518aca5" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.68" +version = "0.21.70" [[deps.VertexSafeGraphs]] deps = ["Graphs"] @@ -1999,23 +2125,34 @@ git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.2.0" +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + [[deps.WriteVTK]] deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "TranscodingStreams", "VTKBase"] -git-tree-sha1 = "48b9e8e9c83865e99e57f027d4edfa94e0acddae" +git-tree-sha1 = "46664bb833f24e4fe561192e3753c9168c3b71b2" uuid = "64499a7a-5c06-52f2-abe2-ccb03c286192" -version = "1.19.1" +version = "1.19.2" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" +git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.7+0" +version = "2.13.1+0" [[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" +version = "1.1.41+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -2073,9 +2210,9 @@ version = "0.1.1+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2085,9 +2222,9 @@ version = "1.5.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "80c3218f29cbc47111ac87e7be5e69cc05c6dd36" +git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.11" +version = "0.4.12" [[deps.Zlib_jll]] deps = ["Libdl"] diff --git a/docs/Project.toml b/docs/Project.toml index 0a1ff7d7..6b9e2fb8 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,4 +1,5 @@ [deps] +CirculatorySystemModels = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244" Ferrite = "c061ca5d-56c9-439f-9c0e-210fe06d3992" From a4e30167d0cb582eacce8668418f43121498b5be Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 12:55:45 +0200 Subject: [PATCH 10/15] gpu-examples --- examples-gpu/Manifest.toml | 305 +++++++++++++++++++++---------------- examples-gpu/Project.toml | 1 + 2 files changed, 172 insertions(+), 134 deletions(-) diff --git a/examples-gpu/Manifest.toml b/examples-gpu/Manifest.toml index 2a06bace..da98480f 100644 --- a/examples-gpu/Manifest.toml +++ b/examples-gpu/Manifest.toml @@ -2,12 +2,12 @@ julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "ea5d191075bbfeb16b0e7e4df08ddcca3ae5b0c9" +project_hash = "bbc25fce6997b28178da004ecb3b27872d69bee0" [[deps.ADTypes]] -git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.1" +version = "1.7.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -79,9 +79,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "8c5b39db37c1d0340bf3b14895fba160c2d6cbb5" +git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.14.0" +version = "7.15.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -92,7 +92,7 @@ version = "7.14.0" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysExt = "StaticArrays" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] @@ -104,7 +104,7 @@ version = "7.14.0" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] @@ -181,6 +181,12 @@ git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" version = "3.4.3" +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] git-tree-sha1 = "fdd9dfb67dfefd548f51000cc400bb51003de247" @@ -194,10 +200,10 @@ weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "97df9d4d6be8ac6270cb8fd3b8fc413690820cbd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "325058b426c2b421e3d2df3d5fa646d72d2e3e7e" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.9.1+1" +version = "0.9.2+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -217,12 +223,6 @@ git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.0+2" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" @@ -233,6 +233,14 @@ weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" +[[deps.CirculatorySystemModels]] +deps = ["CSV", "DataFrames", "ModelingToolkit"] +git-tree-sha1 = "190e4a0e80a6f99a5b4c65393ca307874f2a1634" +repo-rev = "main" +repo-url = "https://github.com/TS-CUBED/CirculatorySystemModels.jl" +uuid = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" +version = "0.4.0" + [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" @@ -241,9 +249,9 @@ version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.5" +version = "0.7.6" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -262,6 +270,11 @@ git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" +[[deps.CommonEq]] +git-tree-sha1 = "6b0f0354b8eb954cdba708fb262ef00ee7274468" +uuid = "3709ef60-1bee-4518-9f2f-acd86f176c50" +version = "0.2.1" + [[deps.CommonMark]] deps = ["Crayons", "JSON", "PrecompileTools", "URIs"] git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071" @@ -286,9 +299,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -367,10 +380,10 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.152.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -382,6 +395,7 @@ version = "6.151.5" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -395,24 +409,25 @@ version = "6.151.5" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" +version = "3.7.0" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ed0158e758723b4d429afbbb5d98c5afd3458dc1" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "ab1e6515ce15f01316a9825b02729fefa51726bd" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.22.0" +version = "5.23.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -434,9 +449,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" +git-tree-sha1 = "5f9a52dc40218e85daa695600733f5ccaa7eb80b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.9" +version = "0.5.13" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -485,9 +500,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" +git-tree-sha1 = "0e0a1264b0942f1f3abb2b30891f2a590cc652ac" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.109" +version = "0.25.110" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -522,12 +537,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.DynamicPolynomials]] deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" @@ -558,9 +567,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" +git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -608,9 +617,9 @@ version = "2.0.4" [[deps.Ferrite]] deps = ["EnumX", "ForwardDiff", "LinearAlgebra", "NearestNeighbors", "OrderedCollections", "Preferences", "Reexport", "SparseArrays", "StaticArrays", "Tensors", "WriteVTK"] -git-tree-sha1 = "3ed81140fa5116369d88a9b24f3d4d710a9ef158" -repo-rev = "6dfa0e4" -repo-url = "https://github.com/Ferrite-FEM/Ferrite.jl.git" +git-tree-sha1 = "25167c55b7681d131cc45e3c8d097274bf67bb34" +repo-rev = "b6976d3" +repo-url = "https://github.com/Ferrite-FEM/Ferrite.jl" uuid = "c061ca5d-56c9-439f-9c0e-210fe06d3992" version = "0.3.14" @@ -634,6 +643,12 @@ git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" version = "1.16.3" +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -650,15 +665,15 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FindFirstFunctions]] -git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" +git-tree-sha1 = "fa0ba2042021409deb144f868abafde0b06be8f0" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.2.0" +version = "1.3.0" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] +git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" +version = "2.24.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -716,9 +731,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.4.12" [[deps.Future]] deps = ["Random"] @@ -801,10 +816,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.11.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.24" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -851,14 +866,14 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" +git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.15" -weakdeps = ["Dates"] +version = "0.1.16" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -913,9 +928,9 @@ version = "0.2.1+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "f12000093078e3dea1ee15de8bb35cfdc0014d97" +git-tree-sha1 = "f8235862db5cf813a52859ff82205d0f22f09a64" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.12.0" +version = "9.13.3" weakdeps = ["FastBroadcast"] [[deps.KLU]] @@ -926,9 +941,9 @@ version = "0.6.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" +git-tree-sha1 = "0fac59881e91c7233a9b0d47f4b7d9432e534f0f" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.22" +version = "0.9.23" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -942,9 +957,9 @@ version = "0.9.6" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c" +git-tree-sha1 = "2470e69781ddd70b8878491233cd09bc1bd7fc96" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "8.0.0" +version = "8.1.0" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -952,9 +967,9 @@ weakdeps = ["BFloat16s"] [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e" +git-tree-sha1 = "597d1c758c9ae5d985ba4202386a607c675ee700" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.30+0" +version = "0.0.31+0" [[deps.LLVMLoopInfo]] git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" @@ -963,9 +978,9 @@ version = "1.0.0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "17.0.6+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -991,16 +1006,18 @@ version = "0.4.6" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "5b0d630f3020b82c0775a51d05895852f8506f50" +git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.4" +version = "0.16.5" [deps.Latexify.extensions] DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LayoutPointers]] @@ -1011,9 +1028,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "b8ea0abe6cc872996e87356951d286d25d485aba" +git-tree-sha1 = "507b423197fdd9e77b74aa2532c0a05eb7eb4004" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.1.9" +version = "2.2.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1108,9 +1125,9 @@ version = "0.9.1" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" +version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1123,10 +1140,10 @@ uuid = "18c40d15-f7cd-5a6d-bc92-87468d86c5db" version = "5.0.0+0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "b2e2dba60642e07c062eb3143770d7e234316772" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "ee625f4053362526950661ce3022c7a483c6f8e5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.2" +version = "2.32.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1272,10 +1289,10 @@ version = "1.2.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "568a7c80b2e3ff43c6c6c92212deeeba7ff4e639" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "1a1263bc643562b614e7eb88f7a1bf7a25136e53" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.26.0" +version = "9.33.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1302,9 +1319,9 @@ version = "0.5.6" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873" +git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.5" +version = "1.4.6" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1342,9 +1359,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "3adb1e5945b5a6b1eaee754077f25ccc402edd7f" +git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.13.1" +version = "3.14.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1479,10 +1496,10 @@ uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.4" [[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.15" +version = "0.7.16" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1504,9 +1521,9 @@ version = "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "d7f3f63331c7c8c81245b4ee2815b7d496365833" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" +version = "0.4.23" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1562,10 +1579,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.ReadVTK]] deps = ["Base64", "CodecZlib", "Downloads", "LightXML", "Reexport", "VTKBase"] @@ -1580,10 +1597,10 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.26.0" +version = "3.27.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1591,6 +1608,7 @@ version = "3.26.0" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -1600,6 +1618,7 @@ version = "3.26.0" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1634,9 +1653,9 @@ version = "0.7.1" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.2+0" +version = "0.4.3+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1673,9 +1692,9 @@ version = "0.6.43" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "380a059a9fd18a56d98e50ed98d40e1c1202e662" +git-tree-sha1 = "79564263adfdeb7a7110316c0bf0da55b95ab281" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.46.0" +version = "2.49.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1697,16 +1716,17 @@ version = "2.46.0" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "23b02c588ac9a17ecb276cc62ab37f3e4fe37b32" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" +version = "0.3.9" +weakdeps = ["SparseArrays"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" +git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.1" +version = "1.4.2" [[deps.Scratch]] deps = ["Dates"] @@ -1735,9 +1755,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" +git-tree-sha1 = "4d7a7c177bcb4c6dc465f09db91bfdb28c578919" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.11.0" +version = "1.12.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1773,9 +1793,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" +git-tree-sha1 = "c9e5d7ee75cf6a1ca3a22c9a6a4ef451792cf62b" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" +version = "2.20.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1798,10 +1818,10 @@ uuid = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" version = "0.6.7" [[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "277e10c002cd780a752bded3b95a8cbc791d646b" +deps = ["ADTypes", "Compat", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "996dff77d814c45c3f2342fa0113e4ad31e712e8" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.5" +version = "0.4.0" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1826,10 +1846,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "1.1.1" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.1" +version = "1.8.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -1901,29 +1921,39 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" +[[deps.SymPyCore]] +deps = ["CommonEq", "CommonSolve", "Latexify", "LinearAlgebra", "Markdown", "RecipesBase", "SpecialFunctions"] +git-tree-sha1 = "bef92ec4c31804bdc9c44cb00eaf0348eac383fb" +uuid = "458b697b-88f0-4a86-b56b-78b75cfb3531" +version = "0.2.5" +weakdeps = ["TermInterface"] + + [deps.SymPyCore.extensions] + SymPyCoreTermInterfaceExt = "TermInterface" + [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" +git-tree-sha1 = "c9fce29fb41a10677e24f74421ebe31220b81ad0" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.26" +version = "0.3.28" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] -git-tree-sha1 = "fb099adbd7504f1e68b4512828e9d94197a8b889" +git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3" uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" -version = "0.2.1" +version = "0.2.2" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] -git-tree-sha1 = "9345b7b8a2923abaf6089d9f7306bb712fecb840" +git-tree-sha1 = "ba393ec8d6072e114d4fdd0d4e24fef3236ac21a" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "2.1.2" +version = "3.1.2" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "44356a85991385883acd0f41ef66c6f770d9a2e7" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymPyCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "3679fafa2004511e135103588ebef1e3b96bb86d" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.34.0" +version = "6.0.0" [deps.Symbolics.extensions] SymbolicsGroebnerExt = "Groebner" @@ -1966,9 +1996,9 @@ uuid = "48a634ad-e948-5137-8d70-aa71f2a747f4" version = "1.16.1" [[deps.TermInterface]] -git-tree-sha1 = "6f0cee95e74d1f6891ba6b35b8b219fd3d11b567" +git-tree-sha1 = "d673e0aca9e46a2f63720201f55cc7b3e7169b16" uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c" -version = "0.4.1" +version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] @@ -1981,7 +2011,7 @@ uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.2" [[deps.Thunderbolt]] -deps = ["Adapt", "BlockArrays", "CommonSolve", "DataStructures", "DiffEqBase", "Ferrite", "FerriteGmsh", "GPUArraysCore", "JLD2", "LinearAlgebra", "LinearSolve", "ModelingToolkit", "OrderedCollections", "Polyester", "ReadVTK", "Reexport", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "SymbolicIndexingInterface", "Tensors", "TimerOutputs", "UnPack", "Unrolled", "WriteVTK"] +deps = ["Adapt", "BlockArrays", "CirculatorySystemModels", "CommonSolve", "DataStructures", "DiffEqBase", "Ferrite", "FerriteGmsh", "GPUArraysCore", "JLD2", "LinearAlgebra", "LinearSolve", "ModelingToolkit", "OrderedCollections", "Polyester", "ReadVTK", "Reexport", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "SymbolicIndexingInterface", "Tensors", "TimerOutputs", "UnPack", "Unrolled", "WriteVTK"] path = ".." uuid = "909927c2-98d5-4a67-bba9-79f03a9ad49b" version = "0.0.1-DEV" @@ -2002,13 +2032,9 @@ uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.29" [[deps.TranscodingStreams]] -git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a" +git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.1" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.2" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] @@ -2074,9 +2100,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" +git-tree-sha1 = "4073c836c2befcb041e5fe306cb6abf621eb3140" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.5" +version = "0.2.0" [[deps.VTKBase]] git-tree-sha1 = "c2d0db3ef09f1942d08ea455a9e252594be5f3b6" @@ -2095,6 +2121,17 @@ git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.2.0" +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + [[deps.WriteVTK]] deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "TranscodingStreams", "VTKBase"] git-tree-sha1 = "46664bb833f24e4fe561192e3753c9168c3b71b2" diff --git a/examples-gpu/Project.toml b/examples-gpu/Project.toml index f331e7a5..4c14fc4e 100644 --- a/examples-gpu/Project.toml +++ b/examples-gpu/Project.toml @@ -1,4 +1,5 @@ [deps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +CirculatorySystemModels = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" Ferrite = "c061ca5d-56c9-439f-9c0e-210fe06d3992" Thunderbolt = "909927c2-98d5-4a67-bba9-79f03a9ad49b" From 4540a50596ecb337a4dffbdb6441236383a14c40 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 13:00:05 +0200 Subject: [PATCH 11/15] readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3eb830ba..465f6aaf 100644 --- a/README.md +++ b/README.md @@ -28,7 +28,7 @@ Installing Thunderbolt can then be done from the Pkg REPL; press `]` at the `jul enter `pkg>` mode: ``` -pkg> add Ferrite#master, https://github.com/termi-official/Thunderbolt.jl#main +pkg> add Ferrite#b6976d3, https://github.com/termi-official/Thunderbolt.jl#main ``` > [!NOTE] From b4cefa0c719364a2abde55c1c38e002899fb6e02 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 13:18:33 +0200 Subject: [PATCH 12/15] oopsie --- src/modeling/core/coefficients.jl | 2 +- src/transfer_operators.jl | 23 +---------------------- test/test_transfer.jl | 4 ++-- 3 files changed, 4 insertions(+), 25 deletions(-) diff --git a/src/modeling/core/coefficients.jl b/src/modeling/core/coefficients.jl index 7aafb5c4..6e78072d 100644 --- a/src/modeling/core/coefficients.jl +++ b/src/modeling/core/coefficients.jl @@ -28,7 +28,7 @@ function _create_field_coefficient_cache(coefficient::FieldCoefficient{T}, ipc:: return FieldCoefficientCache(coefficient.elementwise_data, FerriteUtils.StaticInterpolationValues(fv.ip, SMatrix{Nξs[1], Nξs[2]}(fv.Nξ), nothing)) end -function _create_field_coefficient_cache(coefficient::FieldCoefficient{T}, ipc::VectorizedInterpolationCollection, qr::QuadratureRule, sdh::SubDofHandler) where T +function _create_field_coefficient_cache(coefficient::FieldCoefficient{<:Vec{<:Any, T}}, ipc::VectorizedInterpolationCollection, qr::QuadratureRule, sdh::SubDofHandler) where T cell = get_first_cell(sdh) ip = getinterpolation(coefficient.ip_collection, cell) fv = Ferrite.FunctionValues{0}(T, ip.ip, qr, ip) diff --git a/src/transfer_operators.jl b/src/transfer_operators.jl index 2b15f598..591ce775 100644 --- a/src/transfer_operators.jl +++ b/src/transfer_operators.jl @@ -1,33 +1,12 @@ abstract type AbstractTransferOperator end -# TODO remove after https://github.com/Ferrite-FEM/Ferrite.jl/pull/820 is merged -""" - _spatial_coordinate(ip::VectorizedInterpolation, ξ::Vec, cell_coordinates::AbstractVector{<:Vec{sdim, T}}) -Compute the spatial coordinate in a given quadrature point. `cell_coordinates` contains the nodal coordinates of the cell. -The coordinate is computed, using the geometric interpolation, as -``\\mathbf{x} = \\sum\\limits_{i = 1}^n M_i (\\mathbf{\\xi}) \\mathbf{\\hat{x}}_i`` -""" -_spatial_coordinate(ip::VectorizedInterpolation, ξ::Vec, cell_coordinates::AbstractVector{<:Vec{sdim, T}}) where {T, sdim} = spatial_coordinate(ip.ip, ξ, cell_coordinates) - -function _spatial_coordinate(interpolation::ScalarInterpolation, ξ::Vec{<:Any,T}, cell_coordinates::AbstractVector{<:Vec{sdim, T}}) where {T, sdim} - n_basefuncs = getnbasefunctions(interpolation) - @boundscheck checkbounds(cell_coordinates, Base.OneTo(n_basefuncs)) - - x = zero(Vec{sdim, T}) - @inbounds for j in 1:n_basefuncs - M = reference_shape_value(interpolation, ξ, j) - x += M * cell_coordinates[j] - end - return x -end - function _compute_dof_nodes_barrier!(nodes, sdh, dofrange, gip, dof_to_node_map, ref_coords) for cc ∈ CellIterator(sdh) # Compute for each dof the spatial coordinate of from the reference coordiante and store. # NOTE We assume a continuous coordinate field if the interpolation is continuous. dofs = @view celldofs(cc)[dofrange] for (dofidx,dof) in enumerate(dofs) - nodes[dof_to_node_map[dof]] = _spatial_coordinate(gip, ref_coords[dofidx], getcoordinates(cc)) + nodes[dof_to_node_map[dof]] = spatial_coordinate(gip, ref_coords[dofidx], getcoordinates(cc)) end end end diff --git a/test/test_transfer.jl b/test/test_transfer.jl index 5d24828f..30eecded 100644 --- a/test/test_transfer.jl +++ b/test/test_transfer.jl @@ -41,7 +41,7 @@ dofs_v = @view celldofs(cc)[v_range] dofs_w = @view celldofs(cc)[w_range] for qp in QuadratureIterator(cvv) - x = Thunderbolt._spatial_coordinate(Lagrange{RefTriangle,1}(), qp.ξ, getcoordinates(cc)) + x = Thunderbolt.spatial_coordinate(Lagrange{RefTriangle,1}(), qp.ξ, getcoordinates(cc)) @test function_value(cvv, qp, target_u[dofs_v]) ≈ -norm(x) atol=3e-1 @test all(isnan.(target_u[dofs_w])) end @@ -56,7 +56,7 @@ dofs_v = @view celldofs(cc)[v_range] dofs_w = @view celldofs(cc)[w_range] for qp in QuadratureIterator(cvw) - x = Thunderbolt._spatial_coordinate(Lagrange{RefTriangle,1}(), qp.ξ, getcoordinates(cc)) + x = Thunderbolt.spatial_coordinate(Lagrange{RefTriangle,1}(), qp.ξ, getcoordinates(cc)) @test all(isnan.(target_u[dofs_v])) @test function_value(cvw, qp, target_u[dofs_w]) ≈ norm(x) atol=3e-1 end From b425b9a2c90e9e76838fbfbb139f5170d7b70bdb Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 13:18:48 +0200 Subject: [PATCH 13/15] oopsie#2 --- Project.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/Project.toml b/Project.toml index 97b7d0e5..a8c2c3fa 100644 --- a/Project.toml +++ b/Project.toml @@ -5,7 +5,6 @@ version = "0.0.1-DEV" [deps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -CirculatorySystemModels = "4211d73e-f4e8-40c4-b600-92e4b82f0e1a" CommonSolve = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" From 61d63ac5300957ad839219f897eb58c98c655f1b Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 14:50:39 +0200 Subject: [PATCH 14/15] docs --- docs/src/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/src/index.md b/docs/src/index.md index bd8551ff..8529dc30 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -71,7 +71,7 @@ Installing Thunderbolt can then be done from the Pkg REPL; press `]` at the `jul enter `pkg>` mode: ``` -pkg> add Ferrite#master, https://github.com/termi-official/Thunderbolt.jl#main +pkg> add Ferrite#b6976d3, https://github.com/termi-official/Thunderbolt.jl#main ``` !!! note From 5aa20f2f53a15035c7cf74b85402a5ed2a96ee00 Mon Sep 17 00:00:00 2001 From: Abdulaziz Date: Fri, 16 Aug 2024 15:14:38 +0200 Subject: [PATCH 15/15] io --- src/io.jl | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/src/io.jl b/src/io.jl index b8911cfe..e37ff60d 100644 --- a/src/io.jl +++ b/src/io.jl @@ -18,13 +18,13 @@ function _thunderbolt_fix_create_vtk_grid(filename::AbstractString, grid::Abstra return WriteVTK.vtk_grid(filename, coords, cls) end -function __VTKFileCollection(name::String; kwargs...) +function __paraview_collection(name::String; kwargs...) pvd = WriteVTK.paraview_collection(name; kwargs...) basename = string(first(split(pvd.path, ".pvd"))) - return VTKFileCollection(pvd, nothing, basename, 0) + return WriteVTK.paraview_collection(basename) end -ParaViewWriter(filename::String; kwargs...) = ParaViewWriter(filename, __VTKFileCollection("$filename.pvd"; kwargs...), nothing) +ParaViewWriter(filename::String; kwargs...) = ParaViewWriter(filename, __paraview_collection("$filename.pvd"; kwargs...), nothing) function store_timestep!(io::ParaViewWriter, t, grid::AbstractGrid) if io.current_file === nothing @@ -58,10 +58,10 @@ end function finalize_timestep!(io::ParaViewWriter, t) WriteVTK.vtk_save(io.current_file) - io.pvd.pvd[t] = io.current_file + io.pvd[t] = io.current_file io.current_file = nothing # This updates the PVD file - WriteVTK.save_file(io.pvd.pvd.xdoc, io.pvd.pvd.path) + WriteVTK.save_file(io.pvd.xdoc, io.pvd.path) end function finalize!(io::ParaViewWriter)