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README.md

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3D rat brain atlas

An in-browser visualisation of different structures in the rat brain.

👉 Go to web-app

Preview: image

Controls:

  • click structures on the right to show/hide them
    • Some bigger structures (like the cerebellum) take a while to load.
  • right mouse to pan
  • left mouse to rotate
  • scroll to zoom

For a much more detailed anatomical ontology (though for the mouse brain), and a more advanced interface, see the Allen Brain Explorer: https://connectivity.brain-map.org/3d-viewer


The data here is from

Many thanks to the authors:
Eszter Papp, Lisa Kjonigsen, Evan Calabrese, G. Allan Johnson,
Sveinung Lillehaug, Menno Witter, Jan Bjaalie and Trygve Leergaard.

See data/README.md for how the data was processed.