v0.5.3

What's new:

• Add a configuration to skip cBioPortal data loading
• Update e2e test

v0.5.1

What's new:

• reorganised test data
• fixed git commits
• NGS data optional
• added missing requests dependency
• fixex cBioPortal image
• updated csr2transmart

v0.5.0

Refactoring of the pipeline

The changes include:

• separate the transformation logic into a separate package csr2transmart
• clean up unused code
• reorganise and clean up test data and configuration
• updating dependencies

Details of the refactor plan: https://docs.google.com/document/d/1W8U8VSSCwcHb-tfp0j-0YMUhA6P9MYspEaCS18y-mpE

v0.4.0

What's new:

• use of offline token instead of user password
• changes to modifiers.txt and tmtk dependency to prevent issues with dimension_description table
• age at diagnosis calculation handles missing diagnosis date
• separate general and dev requirements, both pinned
• added MIT license

v0.3.0

What's new:

• Pipeline calls glowingbear backend scan call

v0.2.0

What's new:

• Add study-specific metadata tags to study.Tags.df
• Improve readability of code dealing with study-specific column mapping and metadata tags

v0.1.0

What's new:

• enable code coverage
• validate tree node metadata
• add CSR test study
• test fixes