Adapted new anndata interface

adapted to anndata not exporting anndata.base anymore

Adapting according to discussion at https://github.com/theislab/anndata/issues/174.

preparing 1.0 release

v0.6.0

added dataArray support to constraints building

Last major beta release

Major restructuring of package. The api stayed largely the same though. Default optimizers are changed and convergence is much better for nb_glm now. This is planned to be the last major pre-release, the next large release will be v1.0.0.

First beta release

• Improved size factors
• Added constrained optimization
• Added closed-form hessian and jacobian
• Improved performance
• Added Newton-Raphson optimizer
• Bug fixes and other improvements

Fixes wrong parameter return value in EstimatorStore

v0.3.1

fix wrong parameter return value in EstimatorStore

Added BSD-license and improved performance of estimators

The nb_glm estimator now allows to specify whether float32 or float64 should be used internally.
It now also automatically casts input data, i.e. it is no longer necessary to manually change the input data type.

Improve estimators and add more documentation

• Implemented Newton-Raphson optimizer
• Improved numeric accuracy and added pseudo-inverse for better error resistance
• Added documentation
• Installed versioneer
• Fixed a number of bugs

Initial release for alpha usage

The skeleton of the API is in place but may be changed in the future.