Fix typo in Contributing.md #2853
Workflow file for this run
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name: Run Notebooks | |
on: | |
- push | |
- pull_request | |
jobs: | |
run: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
notebook: [ | |
"docs/tutorials/notebooks/ehrapy_introduction.ipynb", | |
"docs/tutorials/notebooks/mimic_2_introduction.ipynb", | |
"docs/tutorials/notebooks/mimic_2_survival_analysis.ipynb", | |
"docs/tutorials/notebooks/mimic_2_fate.ipynb", | |
"docs/tutorials/notebooks/mimic_2_causal_inference.ipynb", | |
# "docs/tutorials/notebooks/mimic_3_demo.ipynb", | |
# "docs/tutorials/notebooks/medcat.ipynb", | |
] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: "true" | |
token: "${{ secrets.CT_SYNC_TOKEN }}" | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install UV | |
run: pip install uv | |
- name: Install ehrapy and additional dependencies | |
run: uv pip install --system . cellrank nbconvert ipykernel | |
- name: Run ${{ matrix.notebook }} Notebook | |
run: jupyter nbconvert --to notebook --execute ${{ matrix.notebook }} |