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thinhong edited this page Oct 28, 2020 · 23 revisions

MethPanel consists of 2 main components: Upstream analysis and shinyApp client.

  • Upstream analysis: including indexing, trimming, alignment, DNA methylation calling, DNA methylation pattern calling, epipolymorphism calling, compiling a table of methylation values for all samples, calculating metrics

  • shinyApp client: interactive visualization of the above elements

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