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Release Preparation
This page collects dates and tasks for the upcoming release
- Feature-Freeze: '''03.02.2011'''
- Branch: '''04.02.2011''' (Chris)
- Release: '''06.03.2011'''
- Review CHANGELOG
- prepare packages
- reduce checker warnings
- review Trac Tickets https://sourceforge.net/apps/trac/open-ms/query?status=assigned&status=new&status=accepted&status=reopened&group=status&milestone=Release+1.8
- Simulator
- Id-View
- TOPPAS in TOPPView
- external tool support
- alignment-trafo Entkopplun
- Feature Freeze: '''01.08.2010'''
- Release branching: '''04.08.2010''' (only branch when CDash is clean? since Monday its a mess)
- Release candidate: '''15.08.2010'''
- Testing, package building: '''15.08.2010''' - '''31.08.2010'''
- Release of (source+binaries): '''31.08.2010'''
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coordinator in Tübingen: Mathias
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review TOPP docu (Mathias assigns each developer some tools; ideas on what is missing can be collected here)
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test installers on multiple machines/setups. Check all tests, but also the tools, including working thrhough the tutorials
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TOPPAS tutorial (Hannes?)
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TOPPAS workflow collection (bring them to the Retreat, we'll upload them on openms.de afterwards)
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Each example workflow should also come with 1-3 example data sets -- real life datasets obtained from our exptl. collaborators [example pipelines/data from Dortmund workshop, Lars]
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Make sure database search engines are included in the binary (Win/Mac) distributions so people can use them out of the box.
- Are we even allowed to do that? (license?)
- this is only of limited usage for OMSSA, as the user needs to format the DB with BLAST beforehand.
- Can we also find a solution for package-based installation under Linux (are there linux packages for X!T, OMSSA?)
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What is the status of the generic TOPP tool?
- GenericWrapper? Works just nicely. Currently used for wrapping Proteowizard's msconvert.
- We should either
- add specialized versions of GenericWrapper to the list of TOPP tools in TOPPAS (extendable via a config file)
- advantage: we distribute new wrappers to users, just by sending a config file
- type GenericWrapper (-type msconvert, -type ..., -type user_defined)
- advantage: also usable in non-TOPPAS workflows, but new types require a new OpenMS
- add specialized versions of GenericWrapper to the list of TOPP tools in TOPPAS (extendable via a config file)
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revise TOPP (optional withdrawal: sequest/inspect adapters; optional replacement crux??)
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remove/hide entire tools [ #171 Chris]
- candidates (Developer vote):
- SequestAdapter[optional replacement crux??] (Chris, Mathias)
- no candidates:
- InspectAdapter (Chris [tested and works,Win64 [7155] ])
- candidates (Developer vote):
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remove/hide deprecated algorithms (such as in FeatureFinder, FeatureLinker, ConsensusID, ...) [ #152 Hendrik]
- candidates (Developer vote):
- FeatureFinder:
- "simple" (name)
- "simplest" (name)
- FeatureLinker:
- "identification" (name)
- FeatureFinder:
- no candidates:
- vote will be merged into ticket [ #152 Hendrik] at 10. August
- candidates (Developer vote):
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rework TOPPView data management [ #100 Timo]
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see http://sourceforge.net/apps/trac/open-ms/wiki/UpcomingRelease
- what should be contained in every TOPP/UTIL tool:
- possible Predecessor and Successor tools (e.g. FeatureFinder should say: PeakPicker before (for centroided FF) and MapAligner, IDMapper after)
- ...
- look at parameter documentation.
- is the description explanatory or does it just rephrase the parameter name (NOT HELPFUL!)
- is the name appropriate? Should the name be in a subcategory (useful for specific sub-settings, e.g. :, see IDFilter as an example)
- Provide docu in the tutorial about saving and executing pipelines from the command line
- Provide limited assistence for identification-engine install (i.e. link out to OMSSA and X!Tandem)