Fix migrations

db_backup.sql

@@ -5,7 +5,7 @@
 -- Dumped from database version 16.3
 -- Dumped by pg_dump version 16.3
 
--- Started on 2024-08-13 11:26:30
+-- Started on 2024-08-13 11:43:24
 
 SET statement_timeout = 0;
 SET lock_timeout = 0;
@@ -23,7 +23,7 @@ SET default_tablespace = '';
 SET default_table_access_method = heap;
 
 --
--- TOC entry 237 (class 1259 OID 35053)
+-- TOC entry 237 (class 1259 OID 35120)
 -- Name: api_temporarycsvdata; Type: TABLE; Schema: public; Owner: postgres
 --
 
@@ -38,7 +38,7 @@ CREATE TABLE public.api_temporarycsvdata (
 ALTER TABLE public.api_temporarycsvdata OWNER TO postgres;
 
 --
--- TOC entry 236 (class 1259 OID 35052)
+-- TOC entry 236 (class 1259 OID 35119)
 -- Name: api_temporarycsvdata_id_seq; Type: SEQUENCE; Schema: public; Owner: postgres
 --
 
@@ -389,7 +389,7 @@ ALTER TABLE public.hla_phewas_catalog ALTER COLUMN id ADD GENERATED BY DEFAULT A
 
 
 --
--- TOC entry 4982 (class 0 OID 35053)
+-- TOC entry 4982 (class 0 OID 35120)
 -- Dependencies: 237
 -- Data for Name: api_temporarycsvdata; Type: TABLE DATA; Schema: public; Owner: postgres
 --
@@ -566,11 +566,8 @@ COPY public.django_migrations (id, app, name, applied) FROM stdin;
 18	mainapp	0001_initial	2024-06-05 12:22:30.422926+01
 19	sessions	0001_initial	2024-06-05 12:22:30.429435+01
 20	mainapp	0002_hlaphewascatalog_snp	2024-06-05 18:56:53.021445+01
-21	mainapp	0003_gene_snp_allele_hlaphewascatalogrefactor	2024-08-01 13:33:39.286535+01
-22	mainapp	0003_gene_phewas_snp_allele_hlaphewascatalogrefactor	2024-08-01 13:42:12.867089+01
-23	mainapp	0003_alter_hlaphewascatalog_index_together_and_more	2024-08-02 15:48:36.04713+01
-24	api	0001_initial	2024-08-13 06:57:45.405323+01
-25	mainapp	0004_rename_hlaphewascatalog_phewas_string_snp_hla_phewas__phewas__cf5a4b_idx_and_more	2024-08-13 11:18:46.274244+01
+26	api	0001_initial	2024-08-13 11:40:15.019594+01
+27	mainapp	0003_hlaphewascatalog_snp_idx_and_more	2024-08-13 11:42:40.140259+01
 \.
 
 
@@ -241450,7 +241447,7 @@ SELECT pg_catalog.setval('public.django_content_type_id_seq', 12, true);
 -- Name: django_migrations_id_seq; Type: SEQUENCE SET; Schema: public; Owner: postgres
 --
 
-SELECT pg_catalog.setval('public.django_migrations_id_seq', 25, true);
+SELECT pg_catalog.setval('public.django_migrations_id_seq', 27, true);
 
 
 --
@@ -241463,7 +241460,7 @@ SELECT pg_catalog.setval('public.hla_phewas_catalog_id_seq', 1297813, true);
 
 
 --
--- TOC entry 4807 (class 2606 OID 35059)
+-- TOC entry 4807 (class 2606 OID 35126)
 -- Name: api_temporarycsvdata api_temporarycsvdata_pkey; Type: CONSTRAINT; Schema: public; Owner: postgres
 --
 
@@ -241706,15 +241703,15 @@ CREATE INDEX auth_user_username_6821ab7c_like ON public.auth_user USING btree (u
 
 
 --
--- TOC entry 4786 (class 1259 OID 17195)
+-- TOC entry 4786 (class 1259 OID 35130)
 -- Name: category_string_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX category_string_idx ON public.hla_phewas_catalog USING btree (category_string);
 
 
 --
--- TOC entry 4787 (class 1259 OID 17199)
+-- TOC entry 4787 (class 1259 OID 35134)
 -- Name: chromosome_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
@@ -241754,95 +241751,95 @@ CREATE INDEX django_session_session_key_c0390e0f_like ON public.django_session U
 
 
 --
--- TOC entry 4788 (class 1259 OID 17198)
+-- TOC entry 4788 (class 1259 OID 35133)
 -- Name: gene_name_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX gene_name_idx ON public.hla_phewas_catalog USING btree (gene_name);
 
 
 --
--- TOC entry 4789 (class 1259 OID 17190)
+-- TOC entry 4789 (class 1259 OID 35137)
 -- Name: hla_phewas__categor_2cb8d8_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX hla_phewas__categor_2cb8d8_idx ON public.hla_phewas_catalog USING btree (category_string, phewas_string);
 
 
 --
--- TOC entry 4790 (class 1259 OID 17188)
+-- TOC entry 4790 (class 1259 OID 35138)
 -- Name: hla_phewas__phewas__cf5a4b_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX hla_phewas__phewas__cf5a4b_idx ON public.hla_phewas_catalog USING btree (phewas_string, snp);
 
 
 --
--- TOC entry 4791 (class 1259 OID 17189)
+-- TOC entry 4791 (class 1259 OID 35140)
 -- Name: hla_phewas__snp_137310_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX hla_phewas__snp_137310_idx ON public.hla_phewas_catalog USING btree (snp, odds_ratio);
 
 
 --
--- TOC entry 4792 (class 1259 OID 17191)
+-- TOC entry 4792 (class 1259 OID 35139)
 -- Name: hla_phewas__snp_b8d730_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX hla_phewas__snp_b8d730_idx ON public.hla_phewas_catalog USING btree (snp, p);
 
 
 --
--- TOC entry 4795 (class 1259 OID 17196)
+-- TOC entry 4795 (class 1259 OID 35131)
 -- Name: odds_ratio_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX odds_ratio_idx ON public.hla_phewas_catalog USING btree (odds_ratio);
 
 
 --
--- TOC entry 4796 (class 1259 OID 17197)
+-- TOC entry 4796 (class 1259 OID 35132)
 -- Name: p_value_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX p_value_idx ON public.hla_phewas_catalog USING btree (p);
 
 
 --
--- TOC entry 4797 (class 1259 OID 17193)
+-- TOC entry 4797 (class 1259 OID 35128)
 -- Name: phewas_code_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX phewas_code_idx ON public.hla_phewas_catalog USING btree (phewas_code);
 
 
 --
--- TOC entry 4798 (class 1259 OID 17194)
+-- TOC entry 4798 (class 1259 OID 35129)
 -- Name: phewas_string_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX phewas_string_idx ON public.hla_phewas_catalog USING btree (phewas_string);
 
 
 --
--- TOC entry 4799 (class 1259 OID 17200)
+-- TOC entry 4799 (class 1259 OID 35135)
 -- Name: serotype_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX serotype_idx ON public.hla_phewas_catalog USING btree (serotype);
 
 
 --
--- TOC entry 4800 (class 1259 OID 17192)
+-- TOC entry 4800 (class 1259 OID 35127)
 -- Name: snp_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
 CREATE INDEX snp_idx ON public.hla_phewas_catalog USING btree (snp);
 
 
 --
--- TOC entry 4801 (class 1259 OID 17201)
+-- TOC entry 4801 (class 1259 OID 35136)
 -- Name: subtype_idx; Type: INDEX; Schema: public; Owner: postgres
 --
 
@@ -241930,7 +241927,7 @@ ALTER TABLE ONLY public.django_admin_log
     ADD CONSTRAINT django_admin_log_user_id_c564eba6_fk_auth_user_id FOREIGN KEY (user_id) REFERENCES public.auth_user(id) DEFERRABLE INITIALLY DEFERRED;
 
 
--- Completed on 2024-08-13 11:26:31
+-- Completed on 2024-08-13 11:43:24
 
 --
 -- PostgreSQL database dump complete

vis_phewas/api/migrations/0001_initial.py

@@ -1,4 +1,4 @@
-# Generated by Django 5.0.7 on 2024-08-13 05:57
+# Generated by Django 5.1 on 2024-08-13 10:37
 
 from django.db import migrations, models
 

vis_phewas/mainapp/migrations/0003_hlaphewascatalog_snp_idx_and_more.py

@@ -0,0 +1,69 @@
+# Generated by Django 5.1 on 2024-08-13 10:37
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('mainapp', '0002_hlaphewascatalog_snp'),
+    ]
+
+    operations = [
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['snp'], name='snp_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['phewas_code'], name='phewas_code_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['phewas_string'], name='phewas_string_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['category_string'], name='category_string_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['odds_ratio'], name='odds_ratio_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['p'], name='p_value_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['gene_name'], name='gene_name_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['chromosome'], name='chromosome_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['serotype'], name='serotype_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['subtype'], name='subtype_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['category_string', 'phewas_string'], name='hla_phewas__categor_2cb8d8_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['phewas_string', 'snp'], name='hla_phewas__phewas__cf5a4b_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['snp', 'p'], name='hla_phewas__snp_b8d730_idx'),
+        ),
+        migrations.AddIndex(
+            model_name='hlaphewascatalog',
+            index=models.Index(fields=['snp', 'odds_ratio'], name='hla_phewas__snp_137310_idx'),
+        ),
+    ]