bacterial-typing

Here are 3 public repositories matching this topic...

B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm

bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing

Updated Nov 5, 2024
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infinity-a11y / PhyloTrace

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PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.

bioinformatics phylogenetic-trees phylogenetics epidemiology genetic-analysis infectious-diseases cgmlst bacterial-genomes allele-calling bacterial-typing

Updated Nov 6, 2024
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jimmyliu1326 / SamnSero_Nextflow

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Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance

bioinformatics nextflow microbial-genomics infectious-diseases bacterial-typing

Updated Nov 1, 2024
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